Table 1 |
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|
Polyadenylation-related protein factors |
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|
Gene name |
Gene ID* |
U95Av2 probe-sets |
U133A probe-sets |
|
|
|
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|
1 |
CPSF-160, cleavage and polyadenylation specificity factor 1, 160 kDa |
29894 |
33132_at |
201638_s_at 201639_s_at 33132_at |
|
2 |
CPSF-100, cleavage and polyadenylation specificity factor 2, 100 kDa |
53981 |
NA |
NA |
|
3 |
CPSF-73, cleavage and polyadenylation specificity factor 3, 73 kDa |
51692 |
NA |
NA |
|
4 |
CPSF-30, cleavage and polyadenylation specificity factor 4, 30 kDa |
10898 |
35743_at |
206688_s_at |
|
5 |
CFI25, cleavage factor Im, 25 kDa |
11051 |
39142_at |
202697_at 213461_at |
|
6 |
CFI68, cleavage factor Im, 68 kDa |
11052 |
35757_at |
202469_s_at 202470_s_at |
|
7 |
hFip1, Saccharomyces cerevisiae Fip1p like |
81608 |
NA |
221007_s_at |
|
8 |
CstF50, cleavage stimulatory factor subunit 1, 50 kDa |
1477 |
32723_at |
202190_at 32723_at |
|
9 |
CstF-64, cleavage stimulatory factor subunit 2, 64 kDa |
1478 |
40334_at |
204459_at |
|
10 |
CstF-77, cleavage stimulatory factor subunit 3, 77 kDa |
1479 |
41183_at |
203947_at |
|
11 |
Ï„CstF-64, cleavage stimulatory factor subunit 2, 64 kDa, tau variant |
23283 |
41248_at |
212901_s_at 212905_at |
|
12 |
CFIIA, HEAB, ATP/GTP binding protein, component of CFIIAm [52] |
10978 |
33149_at |
204370_at |
|
13 |
PCF11, pre-mRNA cleavage complex II protein [53] |
51585 |
41665_at |
203378_at |
|
14 |
PABPII, poly(A) binding protein, nuclear 1 |
8106 |
39050_at |
201544_x_at 201545_s_at 213046_at |
|
15 |
Symplekin [1,2] |
8189 |
32402_s_at |
32402_s_at 202339_at |
|
16 |
HNRPF, heterogeneous nuclear ribonucleoprotein F [5] |
3185 |
38071_at |
201376_s_at |
|
17 |
HNRPH, heterogeneous nuclear ribonucleoprotein H1 (H) [6] |
3187 |
41292_at |
201031_s_at 213470_s_at 213472_at |
|
18 |
HNRPH', heterogeneous nuclear ribonucleoprotein H2 (H') [6] |
3188 |
41131_f_at 41132_r_at |
201132_at |
|
19 |
U2AF65, U2 small nuclear RNA auxiliary factor2 [7] |
11338 |
32556_at |
218381_s_at 218382_s_at |
|
20 |
U1A, U1 small nuclear ribonucleoprotein polypeptide A [8,10] |
6626 |
40842_at |
201770_at |
|
21 |
PC4, transcriptional coactivator [3] |
10923 |
36171_at |
212857_x_at 214512_s_at 221727_at |
|
22 |
Similar to HSPC182 protein, human HomoloGene of yeast Ssu72 [4] |
286528 |
NA |
NA |
|
23 |
SRp20 [12] |
6428 |
351_f_at 40457_at |
202899_s_at 208672_s_at 208673_s_at |
|
24 |
PTB, polypyrimidine tract binding protein, also known as hnRNP I [11] |
5725 |
40593_at |
202189_x_at 211270_x_at 211271_x_at 212015_x_at 212016_s_at 216306_x_at |
|
25 |
nPTB, polypyrimidine tract binding protein 2 |
58155 |
NA |
218683_at |
|
26 |
PAP, poly(A) polymerase |
10914 |
34855_at |
209388_at 212718_at 212720_at 215374_at 222035_s_at |
|
|
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|
References supporting the role of a given factor in mRNA polyadenylation can be found in review articles Proudfoot et al. [54], Zhao et al. [21], and Edwalds-Gilbert et al. [15], if not otherwise noted. Some genes do not have corresponding probe sets on a microarray, as indicated by NA. *Gene IDs are NCBI Entrez Gene IDs [55]. |
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|
Zhang et al. Genome Biology 2005 6:R100 doi:10.1186/gb-2005-6-12-r100 |
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