Genome Biology

official impact factor 6.89

Open Access Research

Gene expression and metabolite profiling of Populus euphratica growing in the Negev desert

Mikael Brosché1, Basia Vinocur2, Edward R Alatalo3, Airi Lamminmäki1, Thomas Teichmann4, Eric A Ottow4, Dimitar Djilianov5, Dany Afif6, Marie-Béatrice Bogeat-Triboulot7, Arie Altman2, Andrea Polle4, Erwin Dreyer7, Stephen Rudd8, Lars Paulin3, Petri Auvinen3 and Jaakko Kangasjärvi1*

Author Affiliations

1 Plant Biology, Department of Biological and Environmental Sciences, University of Helsinki, P.O. Box 65, Viikinkaari 1, FIN-00014 Helsinki, Finland

2 The Robert H Smith Institute of Plant Sciences and Genetics in Agriculture, Faculty of Agricultural, Food and Environmental Quality Sciences, The Hebrew University of Jerusalem, Herzl Street, Rehovot 76100, Israel

3 Institute of Biotechnology, University of Helsinki, P.O. Box 56, Viikinkaari 4, FIN-00014 Helsinki, Finland

4 Institut für Forstbotanik, Georg-August-Universität Göttingen, Büsgenweg 2, 37077 Göttingen, Germany

5 AgroBioInstitute, 8 Dragan Tzankov Boulevard, 1164 Sofia, Bulgaria

6 UMR INRA-UHP Ecologie et Ecophysiologie Forestières, Faculté des Sciences, F-54506 Vandoeuvre, France

7 UMR INRA-UHP Ecologie et Ecophysiologie Forestières, IFR 110 Génomique, Ecophysiologie et Ecologie Fonctionnelle, INRA Nancy, Route d'Amance, F-54280 Champenoux, France

8 Turku Centre for Biotechnology, BioCity, Tykistökatu 6, FIN-20521 Turku, Finland

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Genome Biology 2005, 6:R101 doi:10.1186/gb-2005-6-12-r101

Published: 2 December 2005

Additional files

Additional data file 1:

A description of the cDNA libraries used for EST sequencing.

Format: XLS Size: 18KB Download file

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Additional data file 2:

Data from the electronic northern analysis showing the most abundant ESTs in leaf libraries.

Format: XLS Size: 20KB Download file

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Additional data file 3:

Data from the electronic northern analysis showing the most abundant ESTs in root libraries.

Format: XLS Size: 17KB Download file

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Additional data file 4:

A comparison of the P. euphratica EST collection with ESTs from other Populus species.

Format: XLS Size: 21KB Download file

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Additional data file 5:

A comparison of the P. euphratica EST collection with other stress enriched EST collections or microarray experiments.

Format: XLS Size: 101KB Download file

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Additional data file 6:

The primers used for real time quantitative RT-PCR.

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Additional data file 7:

Microarray analysis of leaf samples taken from areas A, B, C and P in the Ein Avdat valley.

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