Research
The design of transcription-factor binding sites is affected by combinatorial regulation
1 Department of Molecular Genetics, Weizmann Institute of Science, 76100 Rehovot, Israel
2 Department of Physics of Complex Systems, Weizmann Institute of Science, 76100 Rehovot, Israel
Genome Biology 2005, 6:R103 doi:10.1186/gb-2005-6-12-r103
Published: 2 December 2005Additional files
Additional data file 1:
A figure depicting the effective length and fuzziness of motifs as a function of the number of binding sites in the promoter region
Format: PDF Size: 17KB Download file
This file can be viewed with: Adobe Acrobat Reader
Additional data file 2:
A figure depicting the correlation between fit of binding sites to the motif and the length of the motif
Format: PDF Size: 14KB Download file
This file can be viewed with: Adobe Acrobat Reader
Additional data file 3:
A figure depicting the distribution of promoters according to the number of associated transcription factors/binding sites
Format: PDF Size: 19KB Download file
This file can be viewed with: Adobe Acrobat Reader
Additional data file 4:
A figure depicting average promoter and gene properties as a function of the number of transcription factors
Format: PDF Size: 20KB Download file
This file can be viewed with: Adobe Acrobat Reader
Additional data file 5:
A figure depicting average promoter and gene properties as a function of the number of binding sites, for promoters to which exactly one factor binds
Format: PDF Size: 20KB Download file
This file can be viewed with: Adobe Acrobat Reader
Additional data file 6:
A figure depicting average promoter and gene properties as a function of the number of binding sites, for promoters for which each factor has exactly one binding site
Format: PDF Size: 20KB Download file
This file can be viewed with: Adobe Acrobat Reader
Additional data file 7:
A figure depicting the distribution of correlations between motif length and number of binding sites in randomly shuffled data
Format: PDF Size: 14KB Download file
This file can be viewed with: Adobe Acrobat Reader
