Table 1

Genotype accuracy
SNP
 Number of OLA and sequence data points*
 Identical data points
 % Identical
es02.C3366T
 79
 79
 100
es02.A3435G†
 89
 89
 100
es02.A3707C
 86
 86
 100
es08.A16615C†
 75
 75
 100
es08.C16678T
 77
 77
 100
es08.C16807T
 75
 75
 100
es08.A16882G
 71
 71
 100
es08.A16953T
 44
 44
 100
es12.G27418A
 66
 66
 100
es12.T27548A
 81
 81
 100
es12.T27764C†
 76
 76
 100
es12.T27800C
 69
 67
 97.10
es13.A29775G
 86
 86
 100
es13.A29833C†
 90
 87‡
 96.67
es13.A29956G
 85
 85
 100
es13.C29977T
 89
 89
 100
es13.C30040T
 79
 79
 100
es13.C30152T†
 82
 81‡
 98.78
es15.G35074A†
 322
 322
 100
Total
 1,721
 1,715
 99.65

*The number of individuals assigned a genotype both in the OLA genotyping assay and by direct sequencing of the PCR product used in the assay. †SNP genotypes are out of Hardy-Weinberg equilibrium at P < 0.05. ‡These differences between the genotypes given by OLA and sequencing are due to rare third alleles at the query SNP that were not seen in the initial resequencing.

Macdonald et al. Genome Biology 2005 6:R105   doi:10.1186/gb-2005-6-12-r105

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