Research
Molecular processes during fat cell development revealed by gene expression profiling and functional annotation
-
* Corresponding author: Zlatko Trajanoski zlatko.trajanoski@tugraz.at
- † Equal contributors
1 Institute for Genomics and Bioinformatics and Christian Doppler Laboratory for Genomics and Bioinformatics, Graz University of Technology, Petersgasse 14, 8010 Graz, Austria
2 Research Institute of Molecular Pathology, Dr Bohr-Gasse 7, 1030 Vienna, Austria
3 Dana-Farber Cancer Institute, Department of Biostatistics and Computational Biology, 44 Binney Street, Boston, MA 02115
Genome Biology 2005, 6:R108 doi:10.1186/gb-2005-6-13-r108
Published: 19 December 2005Additional files
Additional data file 2:
A fasta file containing the EST sequences used for the array
Format: ZIP Size: 4MB Download file
Additional data file 3:
An Excel file containing expression values for the 780 selected ESTs
Format: XLS Size: 159KB Download file
This file can be viewed with: Microsoft Excel Viewer
Additional data file 4:
An Excel file containing expression values for the 5205 ESTs filtered with ANOVA
Format: XLS Size: 3.1MB Download file
This file can be viewed with: Microsoft Excel Viewer
Additional data file 5:
GenePix result files containing raw data
Format: ZIP Size: 5.3MB Download file
Additional data file 6:
Images showing the distribution of gene ontology
Format: PDF Size: 5.6MB Download file
This file can be viewed with: Adobe Acrobat Reader
Additional data file 7:
A table listing relevant proteins
Format: XLS Size: 182KB Download file
This file can be viewed with: Microsoft Excel Viewer
Additional data file 8:
A fasta file containing sequences of the relevant proteins
Format: FA Size: 674KB Download file
Additional data file 9:
A pdf file containing real-time RT-PCR data
Format: PDF Size: 71KB Download file
This file can be viewed with: Adobe Acrobat Reader
Additional data file 10:
A table including statistical analysis of independent experiments
Format: XLS Size: 16KB Download file
This file can be viewed with: Microsoft Excel Viewer
Additional data file 11:
A figure showing a comparison with GeneAtlas
Format: PNG Size: 914KB Download file
Additional data file 12:
A table including expression levels from the present study and GeneAtlas
Format: XLS Size: 1MB Download file
This file can be viewed with: Microsoft Excel Viewer
Additional data file 13:
A figure showing a comparison with the data set reported by Soukas and coworkers [8]
Format: PNG Size: 236KB Download file
Additional data file 14:
A figure showing a comparison with the data set reported by Ross and coworkers [9]
Format: PNG Size: 336KB Download file
Additional data file 15:
A figure showing a comparison with the data set reported by Burton and coworkers [12]
Format: PNG Size: 348KB Download file
Additional data file 16:
A table including ESTs unique to the present study
Format: XLS Size: 69KB Download file
This file can be viewed with: Microsoft Excel Viewer
Additional data file 17:
A figure showing genes with miRNA motifs in 3'-UTR
Format: PNG Size: 918KB Download file
Additional data file 18:
A figure illustrating the significant over-representation of miRNA motifs in the 3'-UTR of genes in each cluster
Format: PNG Size: 99KB Download file
Additional data file 19:
A figure showing the significant over-representation of miRNA motifs in the 3'-UTR from genes in cluster 1
Format: PNG Size: 7KB Download file
Additional data file 20:
A figure showing the significant over-representation of miRNA motifs in the 3'-UTR from genes in cluster 2
Format: PNG Size: 17KB Download file
Additional data file 21:
A figure showing the significant over-representation of miRNA motifs in the 3'-UTR from genes in cluster 3
Format: PNG Size: 9KB Download file
Additional data file 22:
A figure showing the significant over-representation of miRNA motifs in the 3'-UTR from genes in cluster 4
Format: PNG Size: 12KB Download file
Additional data file 23:
A figure showing the significant over-representation of miRNA motifs in the 3'-UTR from genes in cluster 6
Format: PNG Size: 13KB Download file
Additional data file 24:
A figure showing the significant over-representation of miRNA motifs in the 3'-UTR from genes in cluster 7
Format: PNG Size: 7KB Download file
Additional data file 25:
A figure showing the significant over-representation of miRNA motifs in the 3'-UTR from genes in cluster 8
Format: PNG Size: 35KB Download file
Additional data file 26:
A figure showing the significant over-representation of miRNA motifs in the 3'-UTR from genes in cluster 9
Format: PNG Size: 39KB Download file
Additional data file 27:
A figure showing the significant over-representation of miRNA motifs in the 3'-UTR from genes in cluster 10
Format: PNG Size: 24KB Download file
Additional data file 28:
A figure showing the significant over-representation of miRNA motifs in the 3'-UTR from genes in cluster 11
Format: PNG Size: 9KB Download file
Additional data file 29:
A figure showing the significant over-representation of miRNA motifs in the 3'-UTR from genes in cluster 12
Format: PNG Size: 27KB Download file
Additional data file 30:
A table including over-represented miRNA motifs in the 3'-UTR from genes in the set of 780 selected ESTs
Format: XLS Size: 29KB Download file
This file can be viewed with: Microsoft Excel Viewer
Additional data file 31:
Text describing regulation of metabolic pathways
Format: PDF Size: 49KB Download file
This file can be viewed with: Adobe Acrobat Reader
Additional data file 32:
A figure showing regulation of metabolic pathways by key points
Format: PDF Size: 611KB Download file
This file can be viewed with: Adobe Acrobat Reader
Additional data file 33:
Figure showing the cellular localization of gene products involved in metabolism and their gene expression at different time points
Format: PDF Size: 1.7MB Download file
This file can be viewed with: Adobe Acrobat Reader
Additional data file 34:
Figure showing the cellular localization of gene products involved in other biological processes and their gene expression at different time points
Format: PDF Size: 1.9MB Download file
This file can be viewed with: Adobe Acrobat Reader
Additional data file 35:
Text describing signaling networks
Format: PDF Size: 96KB Download file
This file can be viewed with: Adobe Acrobat Reader
Additional data file 36:
A text file describing extracellular matrix remodeling and cytoskeleton reorganization
Format: PDF Size: 48KB Download file
This file can be viewed with: Adobe Acrobat Reader
Additional data file 37:
A figure showing cell cycle processes
Format: PDF Size: 285KB Download file
This file can be viewed with: Adobe Acrobat Reader
Additional data file 38:
A figure showing the cholesterol pathway
Format: PDF Size: 75KB Download file
This file can be viewed with: Adobe Acrobat Reader
Additional data file 39:
A list of experimental verified binding site for PPAR:RXR and the derived position weight matrix
Format: PDF Size: 137KB Download file
This file can be viewed with: Adobe Acrobat Reader
Additional data file 40:
Text file containing TRANSFAC matrices for vertebrates
Format: TXT Size: 32KB Download file
Additional data file 41:
A file showing the promoter sequences in fasta format
Format: FA Size: 1.5MB Download file
Additional data file 42:
A file showing the promoter sequences in fasta format
Format: PDF Size: 194KB Download file
This file can be viewed with: Adobe Acrobat Reader
Additional data file 43:
A figure showing clusterwise mapping of 780 ESTs to all chromosomes
Format: PDF Size: 336KB Download file
This file can be viewed with: Adobe Acrobat Reader
Additional data file 44:
An Excel file showing a statistical analysis of colocalized ESTs for 780 selected ESTs
Format: XLS Size: 23KB Download file
This file can be viewed with: Microsoft Excel Viewer
Additional data file 45:
An Excel file showing a statistical analysis of colocalized ESTs for 5,502 ANOVA selected ESTs
Format: XLS Size: 27KB Download file
This file can be viewed with: Microsoft Excel Viewer