Table 3

DNA-repair genes missing only in P. marinus MED4 or in both MED4 and SS120

Gene

COG

Product

MED4

SS120

MIT9313

WH8102


ada/ogt

0350

6-O-methylguanine-DNA methyltransferase

-

-

PMT0269

SYNW1680

mutY

1194

A/G-specific DNA glycosylase

-

Pro1789

PMT0135

SYNW0115

recQ

0514

Superfamily II DNA helicase

-

-

PMT0189

SYNW1958

recJ

0608

Single-stranded DNA-specific exonuclease

-

Pro0984

PMT0761

SYNW1206

exoI/xseA

1570

Exonuclease VII large subunit

-

Pro0111

PMT1641

SYNW2181

xseB

1722

Exonuclease VII small subunit

-

Pro0112

PMT1642

SYNW2182

-

0494

NUDIX hydrolase family

-

-

PMT1026

SYNW1334


Genes in bold are involved in repair of G:C to A:T mutations.

Dufresne et al. Genome Biology 2005 6:R14   doi:10.1186/gb-2005-6-2-r14

Open Data