Table 1

The number of clones and assigned fold change for each pool of PCR products
Pool number
 Number of clones
 Number of assigned Affymetrix probe sets
 Assigned fold change (S vs C)
 Amount of RNA added to each C chip (μg)
 Amount of RNA added to S chip (μg)
1
 87
 84
 1.2
 0.47
 0.56
2
 141
 143
 2
 0.43
 0.85
3
 85
 83
 1.5
 0.35
 0.52
4
 180
 185
 2.5
 0.73
 1.82
5
 90
 89
 1.2
 0.29
 0.35
6
 88
 96
 3
 0.65
 1.94
7
 186
 188
 3.5
 0.76
 2.67
8
 90
 95
 1.5
 0.44
 0.67
9
 180
 190
 4
 0.78
 3.11
10
 183
 191
 1.7
 0.48
 0.81
13
 391
 385
 1
 0.37
 0.37
14
 369
 355
 1
 1.23
 1.23
15
 394
 404
 1
 0.40
 0.40
16
 452
 453
 1
 0.57
 0.57
17
 419
 434
 1
 0.44
 0.44
18
 372
 407
 1
 0.31
 0.31
19
 163
 191
 1
 0.27
 0.27

Also depicted is the total amount of cRNA for each pool that was placed on each chip, and the number of Affymetrix probe sets that are assigned to each pool. There were 10,131 probe sets not assigned to any spiked-in clone (called empty). Pools 11 and 12 were not included in this dataset.

Choe et al. Genome Biology 2005 6:R16   doi:10.1186/gb-2005-6-2-r16