Table 1

The number of clones and assigned fold change for each pool of PCR products

Pool number

Number of clones

Number of assigned Affymetrix probe sets

Assigned fold change (S vs C)

Amount of RNA added to each C chip (μg)

Amount of RNA added to S chip (μg)


1

87

84

1.2

0.47

0.56

2

141

143

2

0.43

0.85

3

85

83

1.5

0.35

0.52

4

180

185

2.5

0.73

1.82

5

90

89

1.2

0.29

0.35

6

88

96

3

0.65

1.94

7

186

188

3.5

0.76

2.67

8

90

95

1.5

0.44

0.67

9

180

190

4

0.78

3.11

10

183

191

1.7

0.48

0.81

13

391

385

1

0.37

0.37

14

369

355

1

1.23

1.23

15

394

404

1

0.40

0.40

16

452

453

1

0.57

0.57

17

419

434

1

0.44

0.44

18

372

407

1

0.31

0.31

19

163

191

1

0.27

0.27


Also depicted is the total amount of cRNA for each pool that was placed on each chip, and the number of Affymetrix probe sets that are assigned to each pool. There were 10,131 probe sets not assigned to any spiked-in clone (called empty). Pools 11 and 12 were not included in this dataset.

Choe et al. Genome Biology 2005 6:R16   doi:10.1186/gb-2005-6-2-r16

Open Data