Method
Genomic analysis of early murine mammary gland development using novel probe-level algorithms
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* Corresponding author: Lewis A Chodosh chodosh@mail.med.upenn.edu
1 Department of Cancer Biology, University of Pennsylvania School of Medicine, Philadelphia, PA 19104-6160, USA
2 Department of Pathology and Laboratory Medicine, University of Pennsylvania School of Medicine, Philadelphia, PA 19104-6160, USA
3 Department of Medicine, University of Pennsylvania School of Medicine, Philadelphia, PA 19104-6160, USA
4 Abramson Family Cancer Research Institute, University of Pennsylvania School of Medicine, Philadelphia, PA 19104-6160, USA
5 Department of Pediatrics, Children's Hospital of Philadelphia, Philadelphia, PA 19104, USA
Genome Biology 2005, 6:R20 doi:10.1186/gb-2005-6-2-r20
Published: 1 February 2005Additional files
Additional data file 1:
A table showing ChipStat and Intersector in combination
Format: XLS Size: 19KB Download file
This file can be viewed with: Microsoft Excel Viewer
Additional data file 2:
A table showing differential gene expression in 2- vs 5-week murine mammary gland using a hybrid ChipStat/Intersector approach
Format: XLS Size: 307KB Download file
This file can be viewed with: Microsoft Excel Viewer
Additional data file 3:
Control file 1 containing CEL data from Affymetrix MG_U74Av2 oligonucleotide microarrays hybridized to RNA from the third to fifth mammary glands harvested from independent pools of three female MTB transgenic mice at 6 weeks 4 days old after 96 hours of doxycycline treatment
Format: ZIP Size: 2.7MB Download file
Additional data file 4:
Control file 2 containing CEL data from Affymetrix MG_U74Av2 oligonucleotide microarrays hybridized to RNA from the third to fifth mammary glands harvested from independent pools of three female MTB transgenic mice at 6 weeks 4 days old after 96 hours of doxycycline treatment
Format: ZIP Size: 2.9MB Download file
Additional data file 5:
Control file 3 containing CEL data from Affymetrix MG_U74Av2 oligonucleotide microarrays hybridized to RNA from the third to fifth mammary glands harvested from independent pools of three female MTB transgenic mice at 6 weeks 4 days old after 96 hours of doxycycline treatment
Format: ZIP Size: 2.8MB Download file
Additional data file 6:
Control file 4 containing CEL data from Affymetrix MG_U74Av2 oligonucleotide microarrays hybridized to RNA from the third to fifth mammary glands harvested from independent pools of three female MTB transgenic mice at 6 weeks 4 days old after 96 hours of doxycycline treatment
Format: ZIP Size: 2.9MB Download file
Additional data file 7:
Control file 5 containing CEL data from Affymetrix MG_U74Av2 oligonucleotide microarrays hybridized to RNA from the third to fifth mammary glands harvested from independent pools of three female MTB transgenic mice at 6 weeks 4 days old after 96 hours of doxycycline treatment
Format: ZIP Size: 2.7MB Download file
Additional data file 8:
Control file 6 containing CEL data from Affymetrix MG_U74Av2 oligonucleotide microarrays hybridized to RNA from the third to fifth mammary glands harvested from independent pools of three female MTB transgenic mice at 6 weeks 4 days old after 96 hours of doxycycline treatment
Format: ZIP Size: 2.9MB Download file
Additional data file 9:
CEL file 1 of data from Affymetrix MG_U74Av2 oligonucleotide microarrays hybridized with mammary gland RNA from independent pools of 10 female FVB mice harvested at 2 weeks of age
Format: ZIP Size: 2.7MB Download file
Additional data file 10:
CEL file 2 of data from Affymetrix MG_U74Av2 oligonucleotide microarrays hybridized with mammary gland RNA from independent pools of 10 female FVB mice harvested at 2 weeks of age
Format: ZIP Size: 2.8MB Download file
Additional data file 11:
CEL file 3 of data from Affymetrix MG_U74Av2 oligonucleotide microarrays hybridized with mammary gland RNA from independent pools of 10 female FVB mice harvested at 2 weeks of age
Format: ZIP Size: 2.7MB Download file
Additional data file 12:
CEL file 1 of data from Affymetrix MG_U74Av2 oligonucleotide microarrays hybridized to mammary gland RNA from independent pools of 10 female FVB mice harvested at 5 weeks of age
Format: ZIP Size: 2.8MB Download file
Additional data file 13:
CEL file 2 of data from Affymetrix MG_U74Av2 oligonucleotide microarrays hybridized to mammary gland RNA from independent pools of 10 female FVB mice harvested at 5 weeks of age
Format: ZIP Size: 2.9MB Download file
Additional data file 14:
CEL file 3 of data from Affymetrix MG_U74Av2 oligonucleotide microarrays hybridized to mammary gland RNA from independent pools of 10 female FVB mice harvested at 5 weeks of age
Format: ZIP Size: 2.7MB Download file