Open Access Method

Genomic analysis of early murine mammary gland development using novel probe-level algorithms

Stephen R Master124, Alexander J Stoddard14, L Charles Bailey145, Tien-Chi Pan14, Katherine D Dugan14 and Lewis A Chodosh134*

Author Affiliations

1 Department of Cancer Biology, University of Pennsylvania School of Medicine, Philadelphia, PA 19104-6160, USA

2 Department of Pathology and Laboratory Medicine, University of Pennsylvania School of Medicine, Philadelphia, PA 19104-6160, USA

3 Department of Medicine, University of Pennsylvania School of Medicine, Philadelphia, PA 19104-6160, USA

4 Abramson Family Cancer Research Institute, University of Pennsylvania School of Medicine, Philadelphia, PA 19104-6160, USA

5 Department of Pediatrics, Children's Hospital of Philadelphia, Philadelphia, PA 19104, USA

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Genome Biology 2005, 6:R20  doi:10.1186/gb-2005-6-2-r20

Published: 1 February 2005

Additional files

Additional data file 1:

A table showing ChipStat and Intersector in combination

Format: XLS Size: 19KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional data file 2:

A table showing differential gene expression in 2- vs 5-week murine mammary gland using a hybrid ChipStat/Intersector approach

Format: XLS Size: 307KB Download file

This file can be viewed with: Microsoft Excel Viewer

Open Data

Additional data file 3:

Control file 1 containing CEL data from Affymetrix MG_U74Av2 oligonucleotide microarrays hybridized to RNA from the third to fifth mammary glands harvested from independent pools of three female MTB transgenic mice at 6 weeks 4 days old after 96 hours of doxycycline treatment

Format: ZIP Size: 2.7MB Download file

Open Data

Additional data file 4:

Control file 2 containing CEL data from Affymetrix MG_U74Av2 oligonucleotide microarrays hybridized to RNA from the third to fifth mammary glands harvested from independent pools of three female MTB transgenic mice at 6 weeks 4 days old after 96 hours of doxycycline treatment

Format: ZIP Size: 2.9MB Download file

Open Data

Additional data file 5:

Control file 3 containing CEL data from Affymetrix MG_U74Av2 oligonucleotide microarrays hybridized to RNA from the third to fifth mammary glands harvested from independent pools of three female MTB transgenic mice at 6 weeks 4 days old after 96 hours of doxycycline treatment

Format: ZIP Size: 2.8MB Download file

Open Data

Additional data file 6:

Control file 4 containing CEL data from Affymetrix MG_U74Av2 oligonucleotide microarrays hybridized to RNA from the third to fifth mammary glands harvested from independent pools of three female MTB transgenic mice at 6 weeks 4 days old after 96 hours of doxycycline treatment

Format: ZIP Size: 2.9MB Download file

Open Data

Additional data file 7:

Control file 5 containing CEL data from Affymetrix MG_U74Av2 oligonucleotide microarrays hybridized to RNA from the third to fifth mammary glands harvested from independent pools of three female MTB transgenic mice at 6 weeks 4 days old after 96 hours of doxycycline treatment

Format: ZIP Size: 2.7MB Download file

Open Data

Additional data file 8:

Control file 6 containing CEL data from Affymetrix MG_U74Av2 oligonucleotide microarrays hybridized to RNA from the third to fifth mammary glands harvested from independent pools of three female MTB transgenic mice at 6 weeks 4 days old after 96 hours of doxycycline treatment

Format: ZIP Size: 2.9MB Download file

Open Data

Additional data file 9:

CEL file 1 of data from Affymetrix MG_U74Av2 oligonucleotide microarrays hybridized with mammary gland RNA from independent pools of 10 female FVB mice harvested at 2 weeks of age

Format: ZIP Size: 2.7MB Download file

Open Data

Additional data file 10:

CEL file 2 of data from Affymetrix MG_U74Av2 oligonucleotide microarrays hybridized with mammary gland RNA from independent pools of 10 female FVB mice harvested at 2 weeks of age

Format: ZIP Size: 2.8MB Download file

Open Data

Additional data file 11:

CEL file 3 of data from Affymetrix MG_U74Av2 oligonucleotide microarrays hybridized with mammary gland RNA from independent pools of 10 female FVB mice harvested at 2 weeks of age

Format: ZIP Size: 2.7MB Download file

Open Data

Additional data file 12:

CEL file 1 of data from Affymetrix MG_U74Av2 oligonucleotide microarrays hybridized to mammary gland RNA from independent pools of 10 female FVB mice harvested at 5 weeks of age

Format: ZIP Size: 2.8MB Download file

Open Data

Additional data file 13:

CEL file 2 of data from Affymetrix MG_U74Av2 oligonucleotide microarrays hybridized to mammary gland RNA from independent pools of 10 female FVB mice harvested at 5 weeks of age

Format: ZIP Size: 2.9MB Download file

Open Data

Additional data file 14:

CEL file 3 of data from Affymetrix MG_U74Av2 oligonucleotide microarrays hybridized to mammary gland RNA from independent pools of 10 female FVB mice harvested at 5 weeks of age

Format: ZIP Size: 2.7MB Download file

Open Data