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Master SR
Stoddard AJ
Bailey LC
Pan TC
Dugan KD
Chodosh LA

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Stoddard AJ
Bailey LC
Pan TC
Dugan KD
Chodosh LA
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Genomic analysis of early murine mammary gland development using novel probe-level algorithms

Stephen R Master¹^,2^,4 , Alexander J Stoddard¹^,4 , L Charles Bailey¹^,4^,5 , Tien-Chi Pan¹^,4 , Katherine D Dugan¹^,4 and Lewis A Chodosh¹^,4^,3

¹Department of Cancer Biology, University of Pennsylvania School of Medicine, Philadelphia, PA 19104-6160, USA

²Department of Pathology and Laboratory Medicine, University of Pennsylvania School of Medicine, Philadelphia, PA 19104-6160, USA

³Department of Medicine, University of Pennsylvania School of Medicine, Philadelphia, PA 19104-6160, USA

⁴Abramson Family Cancer Research Institute, University of Pennsylvania School of Medicine, Philadelphia, PA 19104-6160, USA

⁵Department of Pediatrics, Children's Hospital of Philadelphia, Philadelphia, PA 19104, USA

author email corresponding author email

Genome Biology 2005, 6:R20doi:10.1186/gb-2005-6-2-r20


Published:	1 February 2005

Subject areas: Genome studies, Bioinformatics, Development, Methods

Additional files

Additional data file 1:

A table showing ChipStat and Intersector in combination

Format: XLS Size: 19KB Download file

This file can be viewed with: Microsoft Excel Viewer

Additional data file 2:

A table showing differential gene expression in 2- vs 5-week murine mammary gland using a hybrid ChipStat/Intersector approach

Format: XLS Size: 307KB Download file

This file can be viewed with: Microsoft Excel Viewer

Additional data file 3:

Control file 1 containing CEL data from Affymetrix MG_U74Av2 oligonucleotide microarrays hybridized to RNA from the third to fifth mammary glands harvested from independent pools of three female MTB transgenic mice at 6 weeks 4 days old after 96 hours of doxycycline treatment

Format: ZIP Size: 2.8MB Download file

Additional data file 4:

Control file 2 containing CEL data from Affymetrix MG_U74Av2 oligonucleotide microarrays hybridized to RNA from the third to fifth mammary glands harvested from independent pools of three female MTB transgenic mice at 6 weeks 4 days old after 96 hours of doxycycline treatment

Format: ZIP Size: 2.9MB Download file

Additional data file 5:

Control file 3 containing CEL data from Affymetrix MG_U74Av2 oligonucleotide microarrays hybridized to RNA from the third to fifth mammary glands harvested from independent pools of three female MTB transgenic mice at 6 weeks 4 days old after 96 hours of doxycycline treatment

Format: ZIP Size: 2.9MB Download file

Additional data file 6:

Control file 4 containing CEL data from Affymetrix MG_U74Av2 oligonucleotide microarrays hybridized to RNA from the third to fifth mammary glands harvested from independent pools of three female MTB transgenic mice at 6 weeks 4 days old after 96 hours of doxycycline treatment

Format: ZIP Size: 3MB Download file

Additional data file 7:

Control file 5 containing CEL data from Affymetrix MG_U74Av2 oligonucleotide microarrays hybridized to RNA from the third to fifth mammary glands harvested from independent pools of three female MTB transgenic mice at 6 weeks 4 days old after 96 hours of doxycycline treatment

Format: ZIP Size: 2.8MB Download file

Additional data file 8:

Control file 6 containing CEL data from Affymetrix MG_U74Av2 oligonucleotide microarrays hybridized to RNA from the third to fifth mammary glands harvested from independent pools of three female MTB transgenic mice at 6 weeks 4 days old after 96 hours of doxycycline treatment

Format: ZIP Size: 3MB Download file

Additional data file 9:

CEL file 1 of data from Affymetrix MG_U74Av2 oligonucleotide microarrays hybridized with mammary gland RNA from independent pools of 10 female FVB mice harvested at 2 weeks of age

Format: ZIP Size: 2.8MB Download file

Additional data file 10:

CEL file 2 of data from Affymetrix MG_U74Av2 oligonucleotide microarrays hybridized with mammary gland RNA from independent pools of 10 female FVB mice harvested at 2 weeks of age

Format: ZIP Size: 2.9MB Download file

Additional data file 11:

CEL file 3 of data from Affymetrix MG_U74Av2 oligonucleotide microarrays hybridized with mammary gland RNA from independent pools of 10 female FVB mice harvested at 2 weeks of age

Format: ZIP Size: 2.8MB Download file

Additional data file 12:

CEL file 1 of data from Affymetrix MG_U74Av2 oligonucleotide microarrays hybridized to mammary gland RNA from independent pools of 10 female FVB mice harvested at 5 weeks of age

Format: ZIP Size: 2.8MB Download file

Additional data file 13:

CEL file 2 of data from Affymetrix MG_U74Av2 oligonucleotide microarrays hybridized to mammary gland RNA from independent pools of 10 female FVB mice harvested at 5 weeks of age

Format: ZIP Size: 2.9MB Download file

Additional data file 14:

CEL file 3 of data from Affymetrix MG_U74Av2 oligonucleotide microarrays hybridized to mammary gland RNA from independent pools of 10 female FVB mice harvested at 5 weeks of age

Format: ZIP Size: 2.8MB Download file