Table 1

The 3' codon context of CUG

3' Codon
Residual
3' Codon
Residual
3' Codon
Residual
3' Codon
Residual

AAA
7.436
ACG
0.644
UCU
-10.007
CCA
-2.438
AAG
1.927
CGU
-1.809
CUU
1.167
CCG
2.895
AAU
0.397
CGC
2.981
CUC
2.18
CAU
2.026
AAC
2.037
CGA
8.258
CUA
5.258
CAC
2.642
ACU
-6.947
CGG
5.404
CUG
6.774
CAA
4.049
ACC
-5.239
ACG
-4.726
CCU
-1.769
CAG
7.105
ACA
-5.12
AGG
-0.666
CCC
8.894
UAA
0.22

Positive values indicate that the 3' codons appear in the genome more times than expected (good context) while negative values indicate that the 3' codons appear fewer times than expected assuming a random distribution (bad context). Residual values give a quantitative indication of the context bias, where values falling within the -3 to +3 interval are not statistically significant (no bias). See also Figure 2.

Moura et al. Genome Biology 2005 6:R28   doi:10.1186/gb-2005-6-3-r28