Table 5

A hypothetical r × c contingency table


B1
...
Bj
...
Bc
Marginal total
A1
n11
...
n1j
...
n1c
n1*
...

...

...


Al
nl1
...
nij
...
nlc
n1*
...

...

...


Ar
nr1
...
nrl
...
nrc
nr*
Marginal total
n*1
...
n*i
...
n*c
N

The table illustrates how contingency tables were constructed and how the statistical methodologies described in methods were implemented. One set of categories is represented by rows, the other by columns. In the present case, if the 3' context is being analyzed by Anaconda the rows of the table (A) correspond to the 5' codons and the columns (B) to the 3' codons of each pair.

Moura et al. Genome Biology 2005 6:R28   doi:10.1186/gb-2005-6-3-r28