The Adult Mouse Anatomical Dictionary: a tool for annotating and integrating data
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* Corresponding author: Martin Ringwald ringwald@informatics.jax.org
Genome Biology 2005, 6:R29 doi:10.1186/gb-2005-6-3-r29
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BioMed Central: 13 citations
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Proceedings
Developing a kidney and urinary pathway knowledge base Simon Jupp, Julie Klein, Joost Schanstra, Robert Stevens Journal of Biomedical Semantics 2011, 2(Suppl 2):S7 (17 May 2011) |
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Research
Applying the functional abnormality ontology pattern to anatomical functions Robert Hoehndorf, Axel-Cyrille Ngonga Ngomo, Janet Kelso Journal of Biomedical Semantics 2010, 1:4 (31 March 2010) |
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Method
Integrating phenotype ontologies across multiple species Christopher J Mungall, Georgios V Gkoutos, Cynthia L Smith, Melissa A Haendel, Suzanna E Lewis, Michael Ashburner Genome Biology 2010, 11:R2 (8 January 2010) A phenotypic ontology that can be used for the analysis of phenotype-genotype data across multiple species, paving the way for truly cross species translational research. |
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Proceedings
Practical application of ontologies to annotate and analyse large scale raw mouse phenotype data Tim Beck, Hugh Morgan, Andrew Blake, Sara Wells, John M Hancock, Ann-Marie Mallon BMC Bioinformatics 2009, 10(Suppl 5):S2 (6 May 2009) |
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Proceedings
PhenoGO: an integrated resource for the multiscale mining of clinical and biological data Lee T Sam, Eneida A Mendonça, Jianrong Li, Judith Blake, Carol Friedman, Yves A Lussier BMC Bioinformatics 2009, 10(Suppl 2):S8 (5 February 2009) |
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Correspondence
Muscle Research and Gene Ontology: New standards for improved data integration Erika Feltrin, Stefano Campanaro, Alexander D Diehl, Elisabeth Ehler, Georgine Faulkner, Jennifer Fordham, Chiara Gardin, Midori Harris, David Hill, Ralph Knoell, Paolo Laveder, Lorenza Mittempergher, Alessandra Nori, Carlo Reggiani, Vincenzo Sorrentino, Pompeo Volpe, Ivano Zara, Giorgio Valle, Jennifer Deegan née Clark BMC Medical Genomics 2009, 2:6 (29 January 2009) |
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Proceedings
Gene Ontology annotations: what they mean and where they come from David P Hill, Barry Smith, Monica S McAndrews-Hill, Judith A Blake BMC Bioinformatics 2008, 9(Suppl 5):S2 (29 April 2008) |
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Method
Simplified ontologies allowing comparison of developmental mammalian gene expression Adele Kruger, Oliver Hofmann, Piero Carninci, Yoshihide Hayashizaki, Winston Hide Genome Biology 2007, 8:R229 (25 October 2007) The Developmental eVOC ontologies presented are simplified orthogonal ontologies describing the temporal and spatial distribution of developmental human and mouse anatomy. |
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Methodology article
Robert Hoehndorf, Frank Loebe, Janet Kelso, Heinrich Herre BMC Bioinformatics 2007, 8:377 (9 October 2007) The problem of interoperability of fixed anatomy ontologies with the more flexible phenotype ontologies can be solved by treating canonical information as the default that can be modified when more information is available.
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Method
Celsius: a community resource for Affymetrix microarray data Allen Day, Marc RJ Carlson, Jun Dong, Brian D O'Connor, Stanley F Nelson Genome Biology 2007, 8:R112 (14 June 2007) Celsius is a new system that serves as a warehouse by aggregating Affymetrix files and associated metadata, and containing the largest publicly available source of Affymetrix microarray data. |
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Software
MPHASYS: a mouse phenotype analysis system R Calder, Rudolf B Beems, Harry van Steeg, I Mian, Paul HM Lohman, Jan Vijg BMC Bioinformatics 2007, 8:183 (6 June 2007) |
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Poster presentation
Automated Terminological and Structural Analysis of Human-Mouse Anatomical Ontology Mappings Sarah Luger, Stuart Aitken, Bonnie Webber BMC Bioinformatics 2005, 6(Suppl 3):P19 (21 September 2005) |
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Method
Cynthia L Smith, Carroll-Ann W Goldsmith, Janan T Eppig Genome Biology 2004, 6:R7 (15 December 2004) This article is part of a collection on Ontologies The Mammalian Phenotype (MP) Ontology enables robust annotation of mammalian phenotypes in the context of mutations, quantitative trait loci and strains that are used as models of human biology and disease. |