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Splicing pattern and coding potential of Arabidopsis full-length cDNAs and annotated genes |
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| UniGene cDNAs |
RIKEN cDNAs |
The Arabidopsis genome |
|
|
|
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| Total transcripts |
20,683 |
13,181 |
29,993 |
| Number of transcripts with perfect genome match |
17,814 |
12,877 |
29,993 |
| Number of transcripts with ORFs |
16,621 |
12,544 |
26,207 |
| Number of non-spliced transcripts with ORFs |
2,534 |
1,555 |
4,722 |
| Number of transcripts without ORFs |
1,193 |
333 |
3,786 |
| Number of non-spliced transcripts without ORFs |
466 |
130 |
3,786 |
|
The splicing pattern of each transcript was obtained by aligning its corresponding cDNA sequences to the Arabidopsis genome using sim4. The coding potential of the genomic sequence of each transcript was examined by GeneScan. | |||
Wang et al. Genome Biology 2005 6:R30 doi:10.1186/gb-2005-6-4-r30 |
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