|
Examples of NAT pairs with MPSS matches on both strands |
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| ID |
Strand |
Libraries |
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|
|
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| CAF |
INF |
LEF |
ROF |
SIF |
AP1 |
AP3 |
AGM |
INS |
ROS |
SAP |
S04 |
S52 |
LES |
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|
|
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| Pair A |
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| At1g09750 |
+ |
N |
N |
N |
N |
N |
9 |
N |
0 |
N |
1 |
N |
N |
N |
1 |
| At1g09760 |
- |
70 |
39 |
32 |
46 |
30 |
240 |
125 |
139 |
208 |
170 |
56 |
48 |
48 |
45 |
| Pair B |
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| At1g72060 |
+ |
5 |
N |
31 |
2 |
N |
N |
N |
N |
N |
2 |
N |
1 |
74 |
79 |
| At1g72070 |
- |
0 |
N |
N |
1 |
N |
N |
N |
N |
N |
N |
8 |
N |
N |
N |
|
Distinct expression of sense and antisense transcripts of NAT pair A was observed in all but one library. In the library where both transcripts of pair A were expressed, the abundance of one transcript was significantly higher than the other. For NAT pair B, the sense and antisense transcripts were expressed differentially in different libraries. Libraries in which both transcripts of a NAT pairs were expressed are shown in bold; libraries in which transcripts of only one gene of a NAT pairs were expressed are shown in italics. Abbreviations for libraries: CAF, callus - actively growing, classic MPSS; INF, infloresence - mixed stage, immature buds, classic MPSS; LEF, leaves - 21 day, untreated, classic MPSS; ROF, root - 21 day, untreated, classic MPSS; SIF, silique - 24-48 h post-fertilization, classic MPSS; AP1, ap1-10 infloresence - mixed stage, immature buds; AP3, ap3-6 infloresence - mixed stage, immature buds; AGM, agamous infloresence - mixed stage, immature buds; INS, infloresence - mixed stage, immature buds; ROS, root - 21 day, untreated; SAP, sup/ap1 infloresence - mixed stage, immature buds; S04, leaves, 4 h after salicylic acid treatment; S52, leaves, 52 h after salicylic acid treatment; LES, leaves - 21 day, untreated. | |||||||||||||||
Wang et al. Genome Biology 2005 6:R30 doi:10.1186/gb-2005-6-4-r30 |
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