Viewing options:

Abstract
Full text
PDF (1.6MB)
Additional files

Associated material:

PubMed record

Related literature:

Articles citing this article
on Google Scholar
on ISI Web of Science
on PubMed Central
Other articles by authors
on Google Scholar

Chen WJ
Chang SH
Hudson ME
Kwan WK
Li J
Estes B
Knoll D
Shi L
Zhu T

on PubMed

Chen WJ
Chang SH
Hudson ME
Kwan WK
Li J
Estes B
Knoll D
Shi L
Zhu T
Related articles/pages
on Google

on Google Scholar

on PubMed

Tools:

Post to:

Research

Contribution of transcriptional regulation to natural variations in Arabidopsis

Wenqiong J Chen¹^,2 , Sherman H Chang¹^,2 , Matthew E Hudson¹^,3 , Wai-King Kwan¹^,2 , Jingqiu Li¹^,2 , Bram Estes¹^,4 , Daniel Knoll¹^,5 , Liang Shi¹^,4 and Tong Zhu¹^,4

¹Torrey Mesa Research Institute, Syngenta Research and Technology, 3115 Merryfield Row, San Diego, CA 92121, USA

²Diversa Corporation, 4955 Directors Place, San Diego, CA 92121, USA

³Department of Crop Sciences, University of Illinois, 1101 W. Peabody, Urbana, IL 61801, USA

⁴Syngenta Biotechnology, 3054 Cornwallis Road, Research Triangle Park, NC 27709, USA

⁵Institut für Allgemeine Botanik, Universität Hamburg, Ohnhorststrasse 18, 22609 Hamburg, Germany

author email corresponding author email

Genome Biology 2005, 6:R32doi:10.1186/gb-2005-6-4-r32


Published:	15 March 2005

Subject areas: Genetics, Genome studies, Evolution, Plant biology

Additional files

Additional File 1:

These probe sets were identified based on the coefficients of variance levels of hybridization indices calculated from genomic DNA hybridization data

Format: XLS Size: 301KB Download file

This file can be viewed with: Microsoft Excel Viewer

Additional File 2:

A table showing samples used in this study

Format: XLS Size: 24KB Download file

This file can be viewed with: Microsoft Excel Viewer

Additional File 3:

A table showing correlations between raw and normalized RNA hybridization indices among all 50 samples

Format: XLS Size: 17KB Download file

This file can be viewed with: Microsoft Excel Viewer

Additional File 4:

(a) One-way and (b) two-way ANOVA tables from analysis of variance

Format: XLS Size: 22KB Download file

This file can be viewed with: Microsoft Excel Viewer

Additional File 5:

A table showing an example of the Pearson correlation coefficients matrix for a particular gene obtained from 10 pair-wise comparisons among the five accessions

Format: XLS Size: 14KB Download file

This file can be viewed with: Microsoft Excel Viewer

Additional File 6:

A table showing the sequence variation in promoter regions that alters cis-elements

Format: DOC Size: 345KB Download file

This file can be viewed with: Microsoft Word Viewer

Additional File 7:

A table showing mRNA expression of genes identified from two-way ANOVA

Format: XLS Size: 83KB Download file

This file can be viewed with: Microsoft Excel Viewer

Additional File 8:

A figure showing a histogram of coefficient of variance (CV) based on genomic hybridization intensity indices from the five accessions

Format: PDF Size: 94KB Download file

This file can be viewed with: Adobe Acrobat Reader

Additional File 9:

Two representative samples were shown, the Col-0 4d-seedlings and the NO-0 4d-seedlings before and after genomic DNA normalization. The rest of the 48 samples have similar QQ-profiles

Format: EPS Size: 7.7MB Download file