Table 4

Genes whose expression is different in leaves of the five accessions by one-way ANOVA analysis

Functional category

ATH1 hits

rawp

Bonferroni correction

GenBank ID

Description


01 METABOLISM

17946_s_at

At1g03410

2.84132E-06

0.0213326

gb|AAB97721.1|

2-Oxoglutarate-dependent dioxygenase, putative

19689_at

At5g24140

7.0739E-07

0.0053111

emb|CAA06771.1|

Squalene monooxygenase 2 (squalene epoxidase 2) (SQP2) (SE2)

12277_at

At1g47600

6.47203E-07

0.0048592

gb|AAD46026.1|

Glycosyl hydrolase family 1, similar to thioglucosidase

18836_at

At2g24710

5.09671E-06

0.0382661

gb|AAD26894.1|

Plant glutamate receptor family (GLR2.3)

17620_s_at

At2g42990

3.79611E-06

0.0285012

gb|AAD21711.1|

GDSL-motif lipase/hydrolase protein similar to family II lipase EXL3

20514_i_at

At2g15370

1.35384E-08

0.0001016

gb|AAD22287.1|

Similar to xyloglucan fucosyltransferase

02 ENERGY

12277_at

At1g47600

6.47203E-07

0.0048592

gb|AAD46026.1|

Glycosyl hydrolase family 1, similar to thioglucosidase

10 CELL CYCLE AND DNA PROCESSING

18830_at

At2g32790

1.27302E-06

0.0095579

gb|AAC04484.1|

Ubiquitin-conjugating enzyme

15785_g_at

At1g08840

2.79162E-06

0.0209595

gb|AAB70418.1|

Hypothetical protein gene overlaps Sp6 end of F7G19

11 TRANSCRIPTION

12869_s_at

At4g11880

3.45683E-06

0.0259539

gb|AAC49082.1|

MADS-box protein AGL14

16072_s_at

At5g65790

2.97265E-06

0.0223187

gb|AAC83623.1|

Identical to putative transcription factor (MYB68)

13575_at

At4g03430

6.50883E-06

0.0488683

gb|AAD11585.1|

Similar to yeast pre-mRNA splicing factors

20254_at

At2g22390

2.41214E-06

0.0181104

gb|AAD22360.1|

12366_s_at

At4g11880

2.5787E-06

0.0193608

emb|CAB44326.1|

MADS-box protein AGL14

14885_at

At4g21340

2.22259E-06

0.0166872

emb|CAA20199.1|

Expressed protein, putative bHLH transcription factor (bHLH103)

18830_at

At2g32790

1.27302E-06

0.0095579

gb|AAC04484.1|

Ubiquitin-conjugating enzyme

19244_s_at

At2g04230

2.84687E-06

0.0213743

gb|AAD27915.1|

F-box protein family, contains F-box domain

19279_i_at

At4g21040

7.07742E-07

0.0053137

emb|CAB45899.1|

Dof zinc finger protein, finger protein rolB

13306_at

At2g41070

4.38217E-06

0.0329013

gb|AAD12004.1|

bZIP family transcription factor, contains a bZIP transcription factor basic domain signature

13343_at

At1g34310

4.60448E-08

0.0003457

gb|AAD39615.1|

Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related

15224_at

At1g61540

8.21522E-08

0.0006168

gb|AAD25554.1|

Kelch repeat containing F-box protein family low similarity to SKP1 interacting partner 6

15227_at

At2g01280

5.89076E-06

0.0442278

gb|AAD14528.1|

Transcription factor -related, putative transcription factor IIIB 70 KD subunit (TFIIIB)

16263_at

At2g02320

3.12005E-06

0.0234253

gb|AAC78515.1|

F-box protein (SKP1 interacting partner 3-related)

17145_at

At1g10110

6.9462E-08

0.0005215

gb|AAC34337.1|

Contains Pfam PF00646: F-box domain; similar to F-box protein family, AtFBX7

13863_at

At2g21470

9.36899E-07

0.0070342

gb|AAD23691.1|

Nearly identical to SUMO activating enzyme 2 (SAE2)

12599_at

At2g29910

2.33543E-10

0.0000018

gb|AAD23631.1|

F-box protein family contains F-box domain Pfam:PF00646

12913_at

At4g32880

1.90072E-06

0.0142706

emb|CAA90703.1|

Identical to HD-zip transcription factor (athb-8)

13216_s_at

At1g26310

8.05827E-07

0.0060501

gb|AAA64789.1|

Floral regulatory gene CAULIFLOWER

12863_r_at

At4g18960

1.05463E-06

0.0079181

emb|X53579.1|

Floral homeotic protein agamous (AGAMOUS)

14 PROTEIN FATE (folding, modification, destination)

20254_at

At2g22390

2.41214E-06

0.0181104

gb|AAD22360.1|

Pseudogene, putative GTP-binding protein

18830_at

At2g32790

1.27302E-06

0.0095579

gb|AAC04484.1|

Ubiquitin-conjugating enzyme

13863_at

At2g21470

9.36899E-07

0.0070342

gb|AAD23691.1|

Nearly identical to SUMO activating enzyme 2 (SAE2)

16 PROTEIN WITH BINDING FUNCTION OR COFACTOR REQUIREMENT (structural or catalytic)

20254_at

At2g22390

2.41214E-06

0.0181104

gb|AAD22360.1|

18836_at

At2g24710

5.09671E-06

0.0382661

gb|AAD26894.1|

Plant glutamate receptor family (GLR2.3)

16262_at

At2g46850

4.75288E-06

0.0356846

gb|AAC34215.2|

Ser/Thr protein kinase -related

20 CELLULAR TRANSPORT, TRANSPORT FACILITATION AND TRANSPORT ROUTES

20254_at

At2g22390

2.41214E-06

0.0181104

gb|AAD22360.1|

Pseudogene, putative GTP-binding protein

18830_at

At2g32790

1.27302E-06

0.0095579

gb|AAC04484.1|

Ubiquitin-conjugating enzyme

18836_at

At2g24710

5.09671E-06

0.0382661

gb|AAD26894.1|

Plant glutamate receptor family (GLR2.3)

17618_at

At2g31910

3.44193E-06

0.0258420

gb|AAD32281.1|

Similar to monovalent cation:proton antiporter family 2

30 CELLULAR COMMUNICATION/SIGNAL TRANSDUCTION MECHANISM

20254_at

At2g22390

2.41214E-06

0.0181104

gb|AAD22360.1|

Pseudogene, putative GTP-binding protein

16816_at

At1g19230

5.65137E-06

0.0424305

gb|AAC39478.1|

Respiratory burst oxidase protein E (NADPH oxidase) (RbohE)

18836_at

At2g24710

5.09671E-06

0.0382661

gb|AAD26894.1|

Plant glutamate receptor family (GLR2.3)

19311_g_at

At2g41210

1.643E-06

0.0123356

gb|AAC78530.2|

Phosphatidylinositol-4-phosphate 5-kinase -related

13343_at

At1g34310

4.60448E-08

0.0003457

gb|AAD39615.1|

Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related

15787_s_at

At1g09090

3.64297E-07

0.0027351

gb|AAB70399.1|

Respiratory burst oxidase protein B (NADPH oxidase) (RbohB)

16262_at

At2g46850

4.75288E-06

0.0356846

gb|AAC34215.2|

Ser/Thr protein kinase -related

32 CELL RESCUE, DEFENSE AND VIRULENCE

20254_at

At2g22390

2.41214E-06

0.0181104

gb|AAD22360.1|

Pseudogene, putative GTP-binding protein

12111_s_at

At4g19240

3.30499E-07

0.0024814

emb|CAA18611.1|

Expressed protein

12258_s_at

At4g14370

6.60533E-06

0.0495928

emb|CAB10216.1|

Disease resistance protein (TIR-NBS-LRR class)

12277_at

At1g47600

6.47203E-07

0.0048592

gb|AAD46026.1|

Glycosyl hydrolase family 1, similar to thioglucosidase

12956_i_at

At1g05170

3.64708E-06

0.0273823

gb|AAB71461.1|

Galactosyltransferase family

16375_at

At1g54480

6.28683E-06

0.0472015

gb|AAD25626.1|

Leucine rich repeat protein family contains leucine rich-repeat (LRR) domains

16816_at

At1g19230

5.65137E-06

0.0424305

gb|AAC39478.1|

Respiratory burst oxidase protein E (NADPH oxidase) (RbohE)

18830_at

At2g32790

1.27302E-06

0.0095579

gb|AAC04484.1|

Ubiquitin-conjugating enzyme

19244_s_at

At2g04230

2.84687E-06

0.0213743

gb|AAD27915.1|

F-box protein family, contains F-box domain

15224_at

At1g61540

8.21522E-08

0.0006168

gb|AAD25554.1|

Kelch repeat containing F-box protein family low similarity to SKP1 interacting partner 6

15787_s_at

At1g09090

3.64297E-07

0.0027351

gb|AAB70399.1|

Respiratory burst oxidase protein B (NADPH oxidase) (RbohB)

16263_at

At2g02320

3.12005E-06

0.0234253

gb|AAC78515.1|

F-box protein (SKP1 interacting partner 3-related)

17145_at

At1g10110

6.9462E-08

0.0005215

gb|AAC34337.1|

Contains Pfam PF00646: F-box domain; similar to F-box protein family, AtFBX7

12599_at

At2g29910

2.33543E-10

0.0000018

gb|AAD23631.1|

F-box protein family contains F-box domain Pfam:PF00646

34 INTERACTION WITH THE CELLULAR ENVIRONMENT

16816_at

At1g19230

5.65137E-06

0.0424305

gb|AAC39478.1|

Respiratory burst oxidase protein E (NADPH oxidase) (RbohE)

18830_at

At2g32790

1.27302E-06

0.0095579

gb|AAC04484.1|

Ubiquitin-conjugating enzyme

15787_s_at

At1g09090

3.64297E-07

0.0027351

gb|AAB70399.1|

Respiratory burst oxidase protein B (NADPH oxidase) (RbohB)

36 INTERACTION WITH THE ENVIRONMENT (systemic)

17946_s_at

At1g03410

2.84132E-06

0.0213326

gb|AAB97721.1|

2-Oxoglutarate-dependent dioxygenase, putative

38 TRANSPOSABLE ELEMENTS, VIRAL AND PLASMID PROTEINS

16731_at

At2g11690

1.06284E-06

0.0079798

gb|AAD28679.1|

Pseudogene

18340_at

At4g07700

2.79501E-06

0.0209849

gb|AAD29786.1|

Athila transposon protein -related

40 CELL FATE

18830_at

At2g32790

1.27302E-06

0.0095579

gb|AAC04484.1|

Ubiquitin-conjugating enzyme

41 DEVELOPMENT (systemic)

17677_at

At1g03910

1.54447E-06

0.0115959

gb|AAD10685.1|

Hypothetical protein

13216_s_at

At1g26310

8.05827E-07

0.0060501

gb|AAA64789.1|

Floral regulatory gene CAULIFLOWER

12863_r_at

At4g18960

1.05463E-06

0.0079181

emb|X53579.1|

Floral homeotic protein agamous (AGAMOUS)

42 BIOGENESIS OF CELLULAR COMPONENTS

20254_at

At2g22390

2.41214E-06

0.0181104

gb|AAD22360.1|

Pseudogene, putative GTP-binding protein

18830_at

At2g32790

1.27302E-06

0.0095579

gb|AAC04484.1|

Ubiquitin-conjugating enzyme

13343_at

At1g34310

4.60448E-08

0.0003457

gb|AAD39615.1|

Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related

43 CELL TYPE DIFFERENTIATION

20254_at

At2g22390

2.41214E-06

0.0181104

gb|AAD22360.1|

Pseudogene, putative GTP-binding protein

18830_at

At2g32790

1.27302E-06

0.0095579

gb|AAC04484.1|

Ubiquitin-conjugating enzyme

70 SUBCELLULAR LOCALIZATION

19689_at

At5g24140

7.0739E-07

0.0053111

emb|CAA06771.1|

Squalene monooxygenase 2 (squalene epoxidase 2) (SQP2) (SE2)

20254_at

At2g22390

2.41214E-06

0.0181104

gb|AAD22360.1|

Pseudogene, putative GTP-binding protein

18830_at

At2g32790

1.27302E-06

0.0095579

gb|AAC04484.1|

Ubiquitin-conjugating enzyme

18836_at

At2g24710

5.09671E-06

0.0382661

gb|AAD26894.1|

Plant glutamate receptor family (GLR2.3)

13343_at

At1g34310

4.60448E-08

0.0003457

gb|AAD39615.1|

Transcriptional factor B3 family protein / auxin-responsive factor AUX/IAA-related

13863_at

At2g21470

9.36899E-07

0.0070342

gb|AAD23691.1|

Nearly identical to SUMO activating enzyme 2 (SAE2)

15785_g_at

At1g08840

2.79162E-06

0.0209595

gb|AAB70418.1|

Hypothetical protein gene overlaps Sp6 end of F7G19

13216_s_at

At1g26310

8.05827E-07

0.0060501

gb|AAA64789.1|

Floral regulatory gene CAULIFLOWER

14356_at

At5g59370

3.6446E-08

0.0002736

gb|AAB39403.1|

Identical to SP|P53494 Actin 4

12863_r_at

At4g18960

1.05463E-06

0.0079181

emb|X53579.1|

Floral homeotic protein agamous (AGAMOUS)

No hits to TIGR gene prediction

20512_at

4.2379E-07

0.0031818

gb|AC002336.3|

Arabidopsis thaliana chromosome 2 clone T2P4 map CIC10A06, complete

18049_s_at

5.37206E-07

0.0040333

emb|AJ132404.1|

Arabidopsis thaliana anti-sense transcript, AKL kinase-like gene


Chen et al. Genome Biology 2005 6:R32   doi:10.1186/gb-2005-6-4-r32

Open Data