Table 5

Genes whose expression is affected by accession-by-organ interaction, identified through two-way ANOVA analysis

Functional category

ATH1 hits

Pr(F)-accessions

Pr(F)-Organs

Pr(F)-accessions: organs

Bonferroni corrected Pr(F)-accessions: organs

Description


41 DEVELOPMENT (systemic)

18715_at

At1g14930

1.0285E-05

1.3523E-13

1.2253E-08

9.1998E-05

Major latex protein (MLP)-related low similarity to major latex protein

18229_at

At1g14940

5.4018E-07

3.5527E-15

3.3317E-10

2.5014E-06

Major latex protein (MLP)-related low similarity to major latex protein

18717_at

At1g14950

8.6683E-04

2.3537E-14

3.8173E-07

2.8661E-03

Major latex protein (MLP)-related low similarity to major latex protein

17893_at

At2g23110

2.2913E-06

1.7710E-10

3.0508E-07

2.2906E-03

Late embryogenesis abundant proteins -related

12731_f_at

At2g26960

1.1209E-09

4.2244E-09

1.6659E-09

1.2507E-05

MYB family transcription factor

20004_s_at

At2g35300

3.0731E-06

1.2479E-13

1.4412E-06

1.0820E-02

Late embryogenesis abundant proteins -related identical to GB:X91917

13674_s_at

At2g36640

9.1097E-07

1.4619E-11

8.2287E-07

6.1781E-03

Nearly identical to LEA protein in group 3

17038_s_at

At2g36640

6.4830E-06

1.4944E-10

5.8337E-06

4.3799E-02

Nearly identical to LEA protein in group 3

16896_s_at

At2g41260

3.9707E-11

1.1213E-14

3.9237E-10

2.9459E-06

Glycine-rich, identical to late-embryogenesis abundant M17 protein GI:3342551

19355_s_at

At2g41280

3.7790E-09

6.5988E-10

3.4337E-07

2.5780E-03

Late embryogenesis abundant M10 protein identical to GB:AF076979

15747_at

At2g42560

5.1854E-08

6.4206E-12

3.2085E-07

2.4090E-03

Late embryogenesis abundant (LEA) domain-containing protein

15604_s_at

At3g15400

4.6444E-07

4.5835E-09

3.5477E-06

2.6636E-02

Identical to anther development protein ATA20 GB:AAC50042

19918_at

At3g15670

3.7835E-08

1.5210E-14

4.4004E-08

3.3038E-04

Similar to SP|P13934 Late embryogenesis abundant protein 76 (LEA 76)

18872_at

At3g17520

4.2978E-10

1.1102E-16

2.5048E-09

1.8806E-05

Low similarity to PIR|S04045|S04045 embryonic abundant protein D-29

17282_s_at

At3g51810

1.4069E-08

1.5599E-13

6.4057E-10

4.8094E-06

Embryonic abundant protein AtEm1

20682_g_at

At4g26740

6.4621E-04

2.8866E-15

1.0571E-06

7.9364E-03

Embryo-specific protein 1 (ATS1) putative Ca2+-binding EF-hand protein

13675_s_at

At3g22500

8.1351E-08

7.9450E-09

7.7592E-07

5.8256E-03

LEA protein, putative

04 STORAGE PROTEIN

18295_s_at

At1g03880

3.5027E-08

0.0000E+00

1.9892E-10

1.4935E-06

12S seed storage protein (CRB)

13200_s_at

At1g03880

2.0300E-05

2.4425E-15

1.7983E-07

1.3502E-03

12S seed storage protein (CRB)

20221_at

At1g03890

8.7822E-06

5.1070E-15

2.5720E-07

1.9311E-03

Globulin (seed storage protein) family similar to Arabidopsis thaliana 12S seed storage proteins SP|P15455

20222_g_at

At1g03890

2.3617E-05

2.7756E-15

2.5729E-07

1.9317E-03

globulin (seed storage protein) family similar to Arabidopsis thaliana 12S seed storage proteins SP|P15455

20535_s_at

At2g28490

2.4914E-03

1.1269E-13

3.8367E-06

2.8806E-02

Cupin domain-containing protein similar to preproMP27-MP32 [Cucurbita cv. Kurokawa Amakuri]

15983_s_at

At4g27140

3.1858E-04

1.4433E-15

2.6036E-07

1.9547E-03

2S seed storage protein 1 (NWMU1 - 2S albumin 1) identical to SP|P15457

15984_s_at

At4g27170

8.4937E-06

0.0000E+00

6.1932E-09

4.6498E-05

2S seed storage protein 4 (NWMU2-2S albumin 4) identical to SP|P15460

13449_at

At4g36700

1.5016E-05

2.9865E-14

3.3621E-06

2.5242E-02

Cupin domain-containing protein low similarity to preproMP27-MP32 from Cucurbita cv. Kurokawa Amakuri

16025_s_at

At4g28520

6.5162E-09

0.0000E+00

2.2615E-10

1.6980E-06

12S seed storage protein (cruciferin), putative

16425_s_at

At5g44120

2.4424E-08

6.1062E-15

3.4512E-07

2.5912E-03

12S seed storage protein (CRA1)

13201_at

At5g54740

3.4456E-08

0.0000E+00

1.8704E-11

1.4043E-07

2S seed storage protein family protein

13194_at

At4g27160

1.0828E-06

5.7732E-15

2.4480E-07

1.8380E-03

NWMU3 - 2S albumin 3 precursor, seed storage protein AT2S3

13198_i_at

At4g28520

4.1773E-07

4.8295E-14

8.3466E-08

6.2666E-04

12S cruciferin seed storage protein

13199_r_at

At4g28520

9.8653E-08

1.0880E-14

1.8093E-08

1.3585E-04

12S cruciferin seed storage protein

32 CELL RESCUE, DEFENSE AND VIRULENCE

14789_at

At2g15010

1.0120E-04

1.2166E-12

4.2917E-06

3.2222E-02

Similar to thionin [Arabidopsis thaliana] gi|1181533|gb|AAC41679

18715_at

At1g14930

1.0285E-05

1.3523E-13

1.2253E-08

9.1998E-05

Low similarity to major latex protein {Papaver somniferum}

18229_at

At1g14940

5.4018E-07

3.5527E-15

3.3317E-10

2.5014E-06

Low similarity to major latex protein {Papaver somniferum}

18717_at

At1g14950

8.6683E-04

2.3537E-14

3.8173E-07

2.8661E-03

Low similarity to major latex protein {Papaver somniferum}

20375_at

At1g48130

2.0800E-05

3.1086E-15

1.2134E-07

9.1102E-04

Peroxiredoxin identical to SP:O04005 from [Arabidopsis thaliana]

18716_at

At1g75830

1.0527E-05

4.7479E-10

1.2692E-06

9.5295E-03

Plant defensin protein, putative (PDF1.1)

16450_s_at

At3g50980

1.1415E-05

7.6645E-12

8.6448E-07

6.4905E-03

Dehydrin, putative similar to dehydrin Xero 1

17282_s_at

At3g51810

1.4069E-08

1.5599E-13

6.4057E-10

4.8094E-06

Embryonic abundant protein AtEm1

16892_at

At5g45890

3.2112E-09

0.0000E+00

1.7785E-10

1.3353E-06

Cysteine protease SAG12 identical to senescence-specific protein SAG12

18558_at

At2g21490

3.7353E-07

2.0317E-14

2.1270E-07

1.5969E-03

Putative dehydrin

17310_at

At3g51810

4.4370E-06

4.0301E-14

5.2274E-09

3.9248E-05

Embryonic abundant protein AtEm1

01 METABOLISM

18320_s_at

At1g02790

5.5345E-07

0.0000E+00

1.1637E-07

8.7372E-04

Similar to polygalacturonase

17316_at

At2g16730

8.3049E-09

1.0945E-12

1.0082E-06

7.5697E-03

Glycosyl hydrolase family 35 (beta-galactosidase)

19003_at

At2g25890

1.3232E-05

1.8763E-13

5.8363E-07

4.3819E-03

Oleosin

20375_at

At1g48130

2.0800E-05

3.1086E-15

1.2134E-07

9.1102E-04

Peroxiredoxin identical to SP:O04005 from [Arabidopsis thaliana]

18991_s_at

At3g27660

1.6605E-04

3.1308E-14

2.4540E-06

1.8425E-02

Identical to oleosin isoform GB:S71286 from [Arabidopsis thaliana]

19435_at

At4g00240

3.9561E-08

2.8820E-06

4.0132E-07

3.0131E-03

Phospholipase D -related

16865_s_at

At3g57510

6.4423E-08

3.7925E-13

6.5117E-06

4.8890E-02

Putative similar to polygalacturonase

20412_s_at

At4g25140

3.9887E-06

4.4409E-16

1.5210E-07

1.1420E-03

Oleosin

12435_s_at

At4g34520

1.3485E-05

1.1102E-16

5.6989E-08

4.2788E-04

Fatty acid elongase 1 (FAE1) identical to fatty acid elongase 1 [GI:881615]

16575_s_at

At5g40420

2.6083E-08

0.0000E+00

7.9331E-09

5.9562E-05

Oleosin

20035_at

At5g44440

1.8623E-07

3.5083E-14

4.1535E-07

3.1184E-03

FAD-linked oxidoreductase family similar to SP|P30986 reticuline oxidase precursor (Berberine-bridge-forming enzyme) (BBE)

42 BIOGENESIS OF CELLULAR COMPONENTS

18320_s_at

At1g02790

5.5345E-07

0.0000E+00

1.1637E-07

8.7372E-04

Similar to polygalacturonase GI:288611 from [Zea mays]

19003_at

At2g25890

1.3232E-05

1.8763E-13

5.8363E-07

4.3819E-03

oleosin

15604_s_at

At3g15400

4.6444E-07

4.5835E-09

3.5477E-06

2.6636E-02

Identical to anther development protein ATA20

18716_at

At1g75830

1.0527E-05

4.7479E-10

1.2692E-06

9.5295E-03

Plant defensin protein, putative (PDF1.1)

18991_s_at

At3g27660

1.6605E-04

3.1308E-14

2.4540E-06

1.8425E-02

Identical to oleosin isoform GB:S71286 from [Arabidopsis thaliana]

16865_s_at

At3g57510

6.4423E-08

3.7925E-13

6.5117E-06

4.8890E-02

Similar to polygalacturonase GI:288611 from [Zea mays]

13243_r_at

At4g37990

2.8137E-07

4.7398E-09

9.4561E-07

7.0996E-03

Mannitol dehydrogenase (ELI3-2), putative

16575_s_at

At5g40420

2.6083E-08

0.0000E+00

7.9331E-09

5.9562E-05

Oleosin

70 SUBCELLULAR LOCALIZATION

12085_at

At1g04560

7.4897E-04

2.7756E-15

2.3200E-07

1.7418E-03

Expressed protein similar to GB:AAC37469

12731_f_at

At2g26960

1.1209E-09

4.2244E-09

1.6659E-09

1.2507E-05

MYB family transcription factor

17710_at

At2g28340

7.6288E-08

2.4759E-06

6.9175E-07

5.1936E-03

GATA zinc finger protein and genefinder

20375_at

At1g48130

2.0800E-05

3.1086E-15

1.2134E-07

9.1102E-04

Peroxiredoxin identical to SP:O04005 from [Arabidopsis thaliana]

16892_at

At5g45890

3.2112E-09

0.0000E+00

1.7785E-10

1.3353E-06

Cysteine protease SAG12 identical to senescence-specific protein SAG12

14 PROTEIN FATE (folding, modification, destination)

14420_at

At2g31980

1.3121E-03

2.8566E-13

3.1987E-06

2.4016E-02

Cysteine proteinase inhibitor B (cystatin B) -related

17282_s_at

At3g51810

1.4069E-08

1.5599E-13

6.4057E-10

4.8094E-06

Embryonic abundant protein AtEm1

20682_g_at

At4g26740

6.4621E-04

2.8866E-15

1.0571E-06

7.9364E-03

Embryo-specific protein 1 (ATS1) putative Ca2+-binding EF-hand protein

16892_at

At5g45890

3.2112E-09

0.0000E+00

1.7785E-10

1.3353E-06

Cysteine protease SAG12 identical to senescence-specific protein SAG12

20681_at

At4g26740

1.0968E-05

8.7708E-15

3.7368E-06

2.8056E-02

Embryo-specific protein 1 (ATS1)

17310_at

At3g51810

4.4370E-06

4.0301E-14

5.2274E-09

3.9248E-05

Embryonic abundant protein AtEm1

30 CELLULAR COMMUNICATION/SIGNAL TRANSDUCTION MECHANISM

18958_s_at

At3g15410

1.0215E-06

1.6373E-08

4.1125E-08

3.0876E-04

Leucine rich repeat protein family contains leucine rich-repeat (LRR) domains

19435_at

At4g00240

3.9561E-08

2.8820E-06

4.0132E-07

3.0131E-03

Phospholipase D -related

18958_s_at

At3g15410

1.0215E-06

1.6373E-08

4.1125E-08

3.0876E-04

Leucine rich repeat protein family contains leucine rich-repeat (LRR) domains

20682_g_at

At4g26740

6.4621E-04

2.8866E-15

1.0571E-06

7.9364E-03

Embryo-specific protein 1 (ATS1) putative Ca2+-binding EF-hand protein

20681_at

At4g26740

1.0968E-05

8.7708E-15

3.7368E-06

2.8056E-02

Embryo-specific protein 1 (ATS1)

11 TRANSCRIPTION

12731_f_at

At2g26960

1.1209E-09

4.2244E-09

1.6659E-09

1.2507E-05

MYB family transcription factor

17710_at

At2g28340

7.6288E-08

2.4759E-06

6.9175E-07

5.1936E-03

GATA zinc finger protein and genefinder

20375_at

At1g48130

2.0800E-05

3.1086E-15

1.2134E-07

9.1102E-04

Peroxiredoxin identical to SP:O04005 from [Arabidopsis thaliana]

16892_at

At5g45890

3.2112E-09

0.0000E+00

1.7785E-10

1.3353E-06

Cysteine protease SAG12 identical to senescence-specific protein SAG12

02 ENERGY

16892_at

At5g45890

3.2112E-09

0.0000E+00

1.7785E-10

1.3353E-06

Cysteine protease SAG12 identical to senescence-specific protein SAG12

12 PROTEIN SYNTHESIS

17871_at

At2g16360

9.2371E-07

9.4722E-08

8.4690E-09

6.3585E-05

40S ribosomal protein S25 (RPS25A)

34 INTERACTION WITH THE CELLULAR ENVIRONMENT

20375_at

At1g48130

2.0800E-05

3.1086E-15

1.2134E-07

9.1102E-04

Peroxiredoxin identical to SP:O04005 from [Arabidopsis thaliana]

36 INTERACTION WITH THE ENVIRONMENT (systemic)

20375_at

At1g48130

2.0800E-05

3.1086E-15

1.2134E-07

9.1102E-04

peroxIredoxin identical to SP:O04005 from [Arabidopsis thaliana]


Chen et al. Genome Biology 2005 6:R32   doi:10.1186/gb-2005-6-4-r32

Open Data