An evolutionary and functional assessment of regulatory network motifs
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* Corresponding author: Samuel Bottani bottani@paris7.jussieu.fr
Genome Biology 2005, 6:R35 doi:10.1186/gb-2005-6-4-r35
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Evolvability of feed-forward loop architecture biases its abundance in transcription networks Stefanie Widder, Ricard Solé, Javier Macía BMC Systems Biology 2012, 6:7 (19 January 2012) |
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Chao Wu, Fan Zhang, Xia Li, Shihua Zhang, Jiang Li, Fei Su, Kongning Li, Yuqing Yan BMC Systems Biology 2010, 4:82 (10 June 2010) |
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Integrated cellular network of transcription regulations and protein-protein interactions Yu-Chao Wang, Bor-Sen Chen BMC Systems Biology 2010, 4:20 (8 March 2010) |
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Björn Goemann, Edgar Wingender, Anatolij P Potapov BMC Systems Biology 2009, 3:53 (19 May 2009) |
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Simple molecular networks that respond optimally to time-periodic stimulation Axel Cournac, Jacques-Alexandre Sepulchre BMC Systems Biology 2009, 3:29 (3 March 2009) |
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Protein evolution on a human signaling network Qinghua Cui, Enrico O Purisima, Edwin Wang BMC Systems Biology 2009, 3:21 (18 February 2009) |
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Julio A Freyre-González, José A Alonso-Pavón, Luis G Treviño-Quintanilla, Julio Collado-Vides Genome Biology 2008, 9:R154 (27 October 2008) The |
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Efficiency of the immunome protein interaction network increases during evolution Csaba Ortutay, Mauno Vihinen Immunome Research 2008, 4:4 (22 April 2008) |
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Modeling protein network evolution under genome duplication and domain shuffling Kirill Evlampiev, Hervé Isambert BMC Systems Biology 2007, 1:49 (13 November 2007) |
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Ofer Meshi, Tomer Shlomi, Eytan Ruppin BMC Systems Biology 2007, 1:1 (8 January 2007) Contrary to widespread belief, simple network patterns that are over-represented in yeast are not associated with any particular biological functions, and those patterns that are functionally enriched mainly involve recently evolved genes.
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The effects of incomplete protein interaction data on structural and evolutionary inferences Eric de Silva, Thomas Thorne, Piers Ingram, Ino Agrafioti, Jonathan Swire, Carsten Wiuf, Michael PH Stumpf BMC Biology 2006, 4:39 (3 November 2006) The properties of protein interaction networks are profoundly altered by sampling biases and by noise within available datasets, a finding that must be borne in mind when drawing structural or evolutionary inferences.
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Design principles of molecular networks revealed by global comparisons and composite motifs Haiyuan Yu, Yu Xia, Valery Trifonov, Mark Gerstein Genome Biology 2006, 7:R55 (19 July 2006) A global comparison of the four basic molecular networks in yeast - regulatory, co-expression, interaction and metabolic - reveals general design principles. |