Additional File 3.

The Excel file contains the list of genes found in motif realizations with their biological functions as given by the MIPS database using the FunCat ontology, and different statistics on function occurrences and distribution. The data is presented in three sheets with different viewpoints: First sheet, "Functions by genes": gives a list of all genes found in motifs instances with standard, main and alternative names, motifs and positions within motifs where these genes are found (according to types and positions as defined in Figure 1), and finally biological functions. Second sheet, "Functions by positions": gives motifs and positions within motifs grouped according to functions. For each represented function in FunCat, the first three columns indicate the number, the fraction and the names of the genes found in motifs instances having this function. The following columns indicate the details for each motif type with: the number of genes involved in the given motif with the given function, the fraction of all genes within motifs having this position and this function, the fraction of genes for this function that are at this position, and the fraction of genes at this position having this function. Third sheet, "Genes by positions": gives standard and main name of genes found at each position

Format: XLS Size: 340KB Download file

This file can be viewed with: Microsoft Excel Viewer

Mazurie et al. Genome Biology 2005 6:R35   doi:10.1186/gb-2005-6-4-r35