Table 2 |
||
|
Pfam domains within novel ORFs |
||
| Pfam domain |
Description |
Number |
|
|
||
| adh_short |
Short chain dehydrogenase |
1 |
| Aldo_ket_red |
Aldo/keto reductase family |
1 |
| Amidase_2 |
N-acetylmuramoyl-L-alanine amidase |
1 |
| Ank |
Ankyrin repeat |
3 |
| Bin3 |
Bicoid-interacting protein 3 (Bin3) |
1 |
| CBFD_NFYB_HMF |
Histone-like transcription factor (CBF/NF-Y) and archaeal histone |
1 |
| CH |
Calponin homology (CH) domain |
1 |
| CRAL_TRIO |
CRAL/TRIO domain |
1 |
| Death |
Death domain |
1 |
| DEP |
Domain found in Dishevelled, Egl-10, and Pleckstrin |
1 |
| Dsrm |
Double-stranded RNA binding motif |
2 |
| DUF1395 |
Protein of unknown function (DUF1395) |
1 |
| DUF227 |
Domain of unknown function (DUF227) |
1 |
| DUF783 |
Protein of unknown function (DUF783) |
1 |
| Efhand |
EF hand |
4 |
| Exonuc_X-T |
Exonuclease |
1 |
| F-box |
F-box domain |
1 |
| FYRC |
F/Y rich C-terminus |
1 |
| G_glu_transpept |
Gamma-glutamyltranspeptidase |
1 |
| GST_C |
Glutathione S-transferase, C-terminal domain |
1 |
| HIT |
HIT domain |
1 |
| Ins_allergen_rp |
Insect allergen related repeat |
1 |
| Linker_histone |
Linker histone H1 and H5 family |
1 |
| LRR |
Leucine rich repeat |
4 |
| LSM |
LSM domain |
1 |
| MtN3_slv |
MtN3/saliva family |
2 |
| p450 |
Cytochrome P450 |
2 |
| Pkinase |
Protein kinase domain |
1 |
| Psf2 |
Partner of SLD five, PSF2 |
1 |
| Radical_SAM |
Radical SAM superfamily |
1 |
| Retrotrans_gag |
Retrotransposon gag protein |
1 |
| Ribosomal_L27e |
Ribosomal L27e protein family |
1 |
| Ribosomal_L36e |
Ribosomal protein L36e |
1 |
| Ribosomal_L37e |
Ribosomal protein L37e |
1 |
| Ribosomal_S8 |
Ribosomal protein S8 |
1 |
| RRM_1 |
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) |
1 |
| SAM_1 |
SAM domain (sterile alpha motif) |
1 |
| Serpin |
Serpin (serine protease inhibitor) |
1 |
| Tetraspannin |
Tetraspanin family |
2 |
| THAP |
THAP domain |
2 |
| TIL |
Trypsin inhibitor like cysteine rich domain |
1 |
| TIP49 |
TIP49 C-terminus |
1 |
| TPR |
TPR Domain |
1 |
| TraB |
TraB family |
1 |
| Trypsin |
Trypsin |
1 |
| Tubulin |
Tubulin/FtsZ family, GTPase domain |
1 |
| Tubulin_C |
Tubulin/FtsZ family, C-terminal domain |
1 |
| UNC-50 |
UNC-50 family |
1 |
| UPF0224 |
Uncharacterized protein family (UPF0224) |
1 |
| WD40 |
WD domain, G-beta repeat |
3 |
| zf-C2H2 |
Zinc finger, C2H2 type |
18 |
| zf-C3HC4 |
Zinc finger, C3HC4 type (RING finger) |
1 |
|
|
||
|
Gomez et al. Genome Biology 2005 6:R39 doi:10.1186/gb-2005-6-4-r39 |
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