Genome-scale evidence of the nematode-arthropod clade
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* Corresponding author: Joaquín Dopazo jdopazo@ochoa.fib.es
Genome Biology 2005, 6:R41 doi:10.1186/gb-2005-6-5-r41
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BioMed Central: 12 citations
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Research article
Molecular evolution of cyclin proteins in animals and fungi Konstantin V Gunbin, Valentin V Suslov, Igor I Turnaev, Dmitry A Afonnikov, Nikolay A Kolchanov BMC Evolutionary Biology 2011, 11:224 (28 July 2011) |
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Research article
Selvan Bavan, Volko A Straub, Mark L Blaxter, Steven J Ennion BMC Evolutionary Biology 2009, 9:17 (20 January 2009) |
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Methodology article
Rooted triple consensus and anomalous gene trees Gregory B Ewing, Ingo Ebersberger, Heiko A Schmidt, Arndt von Haeseler BMC Evolutionary Biology 2008, 8:118 (25 April 2008) |
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Research
Igor B Rogozin, Karen Thomson, Miklós Csürös, Liran Carmel, Eugene V Koonin Biology Direct 2008, 3:7 (17 March 2008) Homoplasy denotes the same (parallel) mutations occurring independently in different lineages. It is a scourge of phylogenetic methods. Here, however, it is shown that homoplasy is also an interesting evolutionary phenomenon. Homplasy seems, at least, in part, to underlie the so-called homologous series of phenotypic variation occurring in different, particularly, closely related lineages, an effect first described by the famous Russian geneticict Vavilov some 90 years ago.
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Research
Analysis of 142 genes resolves the rapid diversification of the rice genus Xin-Hui Zou, Fu-Min Zhang, Jian-Guo Zhang, Li-Li Zang, Liang Tang, Jun Wang, Tao Sang, Song Ge Genome Biology 2008, 9:R49 (3 March 2008) The relationships among all diploid genome types of the rice genus were clarified using 142 single-copy genes |
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Research article
Thiago M Venancio, Ricardo DeMarco, Giulliana T Almeida, Katia C Oliveira, João C Setubal, Sergio Verjovski-Almeida BMC Genomics 2007, 8:407 (8 November 2007) |
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Research
Rooting the eutherian tree: the power and pitfalls of phylogenomics Hidenori Nishihara, Norihiro Okada, Masami Hasegawa Genome Biology 2007, 8:R199 (21 September 2007) In an attempt to root the eutherian tree using genome-scale data with the maximum likelihood method, a concatenate analysis supports a putatively wrong tree, whereas separate analyses of different genes reduced the bias. |
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Research article
Daniel Rico, Juan M Vaquerizas, Hernán Dopazo, Lisardo Boscá BMC Genomics 2007, 8:271 (8 August 2007) |
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Research
Jaime Huerta-Cepas, Hernán Dopazo, Joaquín Dopazo, Toni Gabaldón Genome Biology 2007, 8:R109 (13 June 2007) The human phylome, which includes evolutionary relationships of all human proteins and their homologs among thirty-nine fully sequenced eukaryotes, is reconstructed. |
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Research article
Patrick D Danley, Sean P Mullen, Fenglong Liu, Vishvanath Nene, John Quackenbush, Kerry L Shaw BMC Genomics 2007, 8:109 (25 April 2007) |
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Software
SCaFoS: a tool for Selection, Concatenation and Fusion of Sequences for phylogenomics Béatrice Roure, Naiara Rodriguez-Ezpeleta, Hervé Philippe BMC Evolutionary Biology 2007, 7(Suppl 1):S2 (8 February 2007) |
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Minireview
Where is the difference between the genomes of humans and annelids? Alexei Fedorov, Larisa Fedorova Genome Biology 2006, 7:203 (1 February 2006) The first systematic investigation of an annelid genome has revealed that the genes of the marine worm |
