Genome Biology

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Dissection of a DNA-damage-induced transcriptional network using a combination of microarrays, RNA interference and computational promoter analysis

Ran Elkon, Sharon Rashi-Elkeles, Yaniv Lerenthal, Chaim Linhart, Tamar Tenne, Ninette Amariglio, Gideon Rechavi, Ron Shamir and Yosef Shiloh*

Genome Biology 2005, 6:R43 doi:10.1186/gb-2005-6-5-r43

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Research article   Open Access

Deregulation upon DNA damage revealed by joint analysis of context-specific perturbation data

Ewa Szczurek, Florian Markowetz, Irit Gat-Viks, Przemysław Biecek, Jerzy Tiuryn, Martin Vingron BMC Bioinformatics 2011, 12:249 (21 June 2011)

Method   Open Access

Ranked prediction of p53 targets using hidden variable dynamic modeling

Martino Barenco, Daniela Tomescu, Daniel Brewer, Robin Callard, Jaroslav Stark, Michael Hubank Genome Biology 2006, 7:R25 (31 March 2006)

Hidden Variable Dynamic Modelling is a new approach to microarray analysis that quantitatively predicts the regulation of gene activity.