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Natural antisense transcripts with coding capacity in Arabidopsis may have a regulatory role that is not linked to double-stranded RNA degradation

Chih-Hung Jen1, Ioannis Michalopoulos1, David R Westhead1 and Peter Meyer2*

Author Affiliations

1 School of Biochemistry and Microbiology, University of Leeds, Leeds LS2 9JT, UK

2 Centre for Plant Science, The University of Leeds, Leeds LS2 9JT, UK

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Genome Biology 2005, 6:R51  doi:10.1186/gb-2005-6-6-r51

Published: 1 June 2005

Additional files

Additional File 1:

Supplement to Figure 1. List of all overlapping genes with ID, annotation and size of overlapping region. List of all overlapping genes with ID, annotation and size of overlapping region

Format: XLS Size: 266KB Download file

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Additional File 2:

Supplement to Figure 2. Classification of 1,912 COPs genes according to their overlapping regions. Classification of 1,912 COPs genes according to their overlapping regions

Format: XLS Size: 328KB Download file

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Additional File 3:

Supplement to Figure 3. Calculation of the antisense transcript end position in relation to the sense intron-exon boundary for the 956 COPs pairs. Calculation of the antisense transcript end position in relation to the sense intron-exon boundary for the 956 COPs pairs

Format: XLS Size: 132KB Download file

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Additional File 4:

Supplement A to Table 2. 242 COPs member genes of 89 COPs families. 242 COPs member genes of 89 COPs families

Format: XLS Size: 55KB Download file

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Additional File 5:

Supplement B to Table 2. Comparison of homology among 1 kb promoter regions of COPs family members. Comparison of homology among 1 kb promoter regions of COPs family members

Format: XLS Size: 82KB Download file

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Additional File 6:

Supplement C to Table 2. Homology comparison among sense and antisense encoded proteins for members of 89 COPs families. Homology comparison among sense and antisense encoded proteins for members of 89 COPs families

Format: XLS Size: 151KB Download file

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Additional File 7:

Supplement to Table 4. Expression analysis of the total gene pool and the COPs gene pool for 1,437 microarray experiments. Expression analysis of the total gene pool and the COPs gene pool for 1,437 microarray experiments

Format: XLS Size: 307KB Download file

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Additional File 8:

Supplement to Table 6. Correlation analysis of alternative splicing, TSS variation and polyadenylation variation for COPs with respect to the termination of the antisense transcript in relation to the sense intron-exon boundary. Correlation analysis of alternative splicing, TSS variation and polyadenylation variation for COPs with respect to the termination of the antisense transcript in relation to the sense intron-exon boundary

Format: PDF Size: 46KB Download file

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