Table 5 |
|||
|
Representation of spliced genes among COPs, and correlation analysis for transcript modifications among these genes |
|||
|
Total genes |
COPs |
p-value |
|
|
|
|||
|
COP genes show a strong positive bias for splicing |
|||
|
Total |
30,624 |
1,912 |
|
|
Spliced |
21,157 (69.1%) |
1,723 (90.1%) |
4.7e-113 |
|
Spliced COP genes show a positive bias for alternative splicing |
|||
|
Spliced |
21,157 |
1,723 |
|
|
Alternatively spliced |
2,331 (11.0%) |
268 (15.6%) |
1.3e-9 |
|
Alternatively spliced COP genes do not show a significant bias for alternative splicing at the last intron, TSS variation or polyadenylation site variation |
|||
|
Alternatively spliced |
2,331 |
268 |
|
|
Last intron alternative splicing |
1,662 (71.3%) |
195 (72.8%) |
0.31 |
|
TSS variation |
1,424 (61%) |
158 (59.0%) |
0.24 |
|
Polyadenylation site variation |
1,019 (43.7%) |
107 (39.9%) |
0.10 |
|
|
|||
|
Jen et al. Genome Biology 2005 6:R51 doi:10.1186/gb-2005-6-6-r51 |
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