Genome Biology

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Tiling microarray analysis of rice chromosome 10 to identify the transcriptome and relate its expression to chromosomal architecture

Lei Li1, Xiangfeng Wang2,3,4, Mian Xia5, Viktor Stolc1,6, Ning Su1, Zhiyu Peng2, Songgang Li3, Jun Wang4, Xiping Wang5 and Xing W Deng1*

Author Affiliations

1 Department of Molecular, Cellular, and Developmental Biology, Yale University, New Haven, CT 06520, USA

2 National Institute of Biological Sciences, Zhongguancun Life Science Park, Beijing 102206, China

3 Peking-Yale Joint Research Center of Plant Molecular Genetics and Agrobiotechnology, College of Life Sciences, Peking University, Beijing 100871, China

4 Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing 101300, China

5 National Center of Crop Design, China Bioway Biotech Group Co., LTD, Beijing 100085, China

6 Genome Research Facility, NASA Ames Research Center, MS 239-11, Moffett Field, CA 94035, USA

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Genome Biology 2005, 6:R52 doi:10.1186/gb-2005-6-6-r52

Published: 27 May 2005

Additional files

Additional File 1:

Table S1. Integrated japonica chromosome 10 nonredundant gene models. Integrated japonica chromosome 10 nonredundant gene models.

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Additional File 2:

Table S2: Indica chromosome 10 nonredundant gene models. Indica chromosome 10 nonredundant gene models.

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Additional File 3:

Table S3: Sequence analysis of cloned UG models. Sequence analysis of cloned UG models.

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Additional File 4:

Table S4: Japonica chromosome 10 intergenic TARs. Japonica chromosome 10 intergenic TARs.

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Additional File 5:

Table S5: Sequence analysis of cloned intergenic TARs. Sequence analysis of cloned intergenic TARs.

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Additional File 6:

Table S6: Comparison of BGI and TIGR japonica chromosome 10 gene models. Comparison of BGI and TIGR japonica chromosome 10 gene models.

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Additional File 7:

Table S7: Comparison of BGI indica and japonica chromosome 10 gene models. Comparison of BGI indica and japonica chromosome 10 gene models.

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