Table 1

Classification and array detection of rice chromosome 10 gene models

Annotation

Nonredundant protein-coding gene model

TE

Type

Annotated

Detected

Percentage

BGI indica

CG

821

784

95.5%

EG

328

290

88.4%

UG

1,660

1,354

81.6%

Total

2,809

2,428

86.4%

574

BGI japonica

CG

943

879

93.2%

EG

272

238

87.5%

UG

1,549

1,202

77.6%

Total

2,764

2,319

83.9%

851

TIGR japonica

CG

935

871

93.2%

EG

321

291

90.7%

UG

1,763

1,310

74.3%

Total

3,019

2,472

81.9%

829

Rice chromosome 10 protein-coding gene models were divided into TE and nonredundant models based on available annotations. Because of their repetitiveness, expression of TE models was not assessed. The nonredundant models were further divided into CG, EG and UG models based on their alignment to rice full-length cDNAs and ESTs and their expression assessed by tiling microarray analysis.

Li et al. Genome Biology 2005 6:R52   doi:10.1186/gb-2005-6-6-r52