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Table 4
Factor analysis for putative targets of miRNAs
	Factor 1			Factor 2			Factor 3			Factor 4

	Name	Load	p₁	Name	Load	p₁	Name	Load	p₁	Name	Load	p₁

1	kel	-0.90	0.05	CG5805	-0.92	0.04	CG7995	0.89	0.01	tws	0.80	0.06
2	CG6327	0.89	0.18	Cirl	0.89	0.23	CG4710	0.89	0.07	CG3689	0.78	0.14
3	CG18812	0.88	0.00	CG9245	0.82	0.05	CG4851	0.87	0.19	CG3811	0.77	0.11
4	Cyp314a1	-0.88	0.06	l(2)03709	0.82	0.13	Rpn6	0.87	0.12	CG11883	0.77	0.03
5	Gclc	0.87	0.01	Eh	0.82	0.12	up	-0.84	0.24	CG10809	0.74	0.34
6	sima	0.86	0.11	fz	0.81	0.13	Pkc98E	0.82	0.42	CG11128	0.74	0.17
7	CG9924	0.85	0.17	CG6330	0.80	0.11	CSN4	0.80	0.01	CG3961	0.72	0.15
8	CrebA	0.84	0.00	Atpalpha	0.79	0.38	cpo	0.72	0.41	CG5087	0.72	0.06
9	Mbs	-0.84	0.04	Surf4	0.79	0.29	drongo	0.72	0.12	unc-13	-0.70	0.07
10	fax	0.79	0.03	sano	0.79	0.02	fng	0.71	0.56	CG12424	0.70	0.16
11	RhoGEF2	0.78	0.11	CG12424	-0.78	0.40	G-oalpha47A	0.70	0.05	CG13344	0.70	0.03
12	CG9664	-0.78	0.34	CG4911	0.78	0.48	PFgn0025879	0.69	0.26	Sap47	0.69	0.05
13	CG2991	0.77	0.12	JhI-21	-0.77	0.34	Cka	-0.69	0.12	CG6325	0.69	0.29
14	CG8602	-0.76	0.04	CG9339	0.77	0.09	Ptp99A	0.68	0.07	CG8475	0.68	0.09
15	BicD	0.76	0.07	CG18604	0.76	0.02	cenG1A	0.67	0.22	CG5625	0.67	0.04
16	CG8954	0.76	0.29	G-oalpha47A	-0.76	0.02	Ef1gamma	0.67	0.18	PFgn0025879	0.67	0.26
17	dock	0.75	0.08	CG11266	0.76	0.06	CG4452	0.67	0.03	CG5039	0.67	0.01
18	CG10077	0.75	0.03	CG15628	0.75	0.11	CG3764	0.66	0.05	CG3534	-0.67	0.14
19	CG9381	-0.73	0.33	AP-47	0.73	0.15	CG5853	0.66	0.00	Pkc53E	0.65	0.15
20	Mbs	0.72	0.11	CG14762	0.73	0.05	ed	0.65	0.07	CG17646	0.65	0.13
21	BG:DS04929.1	0.71	0.03	CG4963	0.73	0.11	trx	0.65	0.26	CG11178	0.64	0.07
22	bon	0.70	0.11	Eip71CD	0.68	0.09	Cyp18a1	0.64	0.17	CG1814	-0.63	0.00
23	CG9413	0.70	0.60	CG7956	0.67	0.11	SoxN	0.63	0.03	CG14989	0.62	0.07
24	CG6282	-0.69	0.16	ple	0.66	0.17	eIF-5A	0.63	0.23	Sh	0.61	0.11
25	puc	0.69	0.01	CG9297	0.66	0.03	Atpalpha	0.63	0.02	CG9828	0.59	0.20
26	Mkp3	0.68	0.09	CG11198	0.66	0.01	Dr	0.62	0.19	pdm2	-0.58	0.20
27	CG4841	0.68	0.19	Cyp49a1	0.65	0.00	CG3961	0.62	0.15	CG6803	0.58	0.01
28	CG5886	0.67	0.05	gish	0.65	0.04	lack	0.61	0.08	Ptp99A	-0.56	0.07
29	CG9934	0.67	0.42	wdp	-0.65	0.01	G-oalpha47A	-0.61	0.02	Abd-B	0.55	0.06
30	Rab6	0.66	0.09	Pdi	0.65	0.14	CG16971	0.60	0.17	ana	0.55	0.03
31	CG7492	-0.65	0.29	sdk	0.63	0.34	Cdk4	0.60	0.21	CG6199	-0.54	0.26
32	CanA-14F	0.65	0.01	CG4484	-0.63	0.23	CG18854	0.60	0.06	Nmda1	0.54	0.34
33	CG10338	-0.65	0.03	nmdyn-D7	0.62	0.08	aop	0.60	0.01	CG9265	-0.53	0.13
34	CG8617	-0.65	0.22	scrt	-0.61	0.17	tws	0.59	0.00	CG10494	0.51	0.26
35	CG6064	0.64	0.01	mys	-0.61	0.11	wdp	0.58	0.01	CG9638	0.50	0.05
36	fkh	0.64	0.13	CG11537	0.61	0.33	CG1441	0.57	0.33	RhoGAPp190	0.50	0.00
37	Cka	0.64	0.12	CG8104	0.60	0.07	Cyp49a1	-0.57	0.18	CG4452	0.48	0.03
38	Mkp3	0.62	0.01	Mbs	0.60	0.11	CG17646	0.57	0.02	CG6554	-0.47	0.38
39	trx	0.62	0.26	CG5853	-0.60	0.00	CG4841	0.57	0.19	CG18375	-0.46	0.00
40	CG13586	0.62	0.25	tsl	0.59	0.00	CrebA	0.55	0.10	woc	0.45	0.32
41	amon	-0.61	0.21	UbcD2	0.58	0.21	Ef1alpha100E	0.54	0.08	CG8791	0.45	0.03
42	osp	0.60	0.01	ytr	0.58	0.02	Hr39	0.52	0.21	BicD	-0.45	0.07
43	Trn	0.60	0.02	G-oalpha47A	0.58	0.05	woc	-0.50	0.32	dco	0.44	0.02
44	CG7283	0.60	0.00	CG3800	0.56	0.52	vri	0.50	0.00	amon	0.44	0.21
45	Eip93F	0.59	0.06	Tsf2	0.56	0.21	CG16953	-0.50	0.10	CG1441	-0.44	0.33
46	CrebA	0.59	0.10	BcDNA:LD23587	0.56	0.20	dco	-0.49	0.02	CG9297	-0.43	0.03
47	Ptp4E	0.59	0.79	Nmda1	-0.54	0.34	puc	0.49	0.01	CG13586	-0.43	0.25
48	BcDNA:LD32788	0.58	0.13	Ubc-E2H	-0.53	0.00	CG8475	0.48	0.09	CG9664	-0.42	0.34
49	Hr39	0.56	0.21	Ac3	0.52	0.23	CG8602	0.48	0.04	scrt	0.41	0.17
50	ed	0.56	0.07	CG15658	-0.51	0.10	CG12424	-0.47	0.16	Cf2	0.41	0.47
51	CG11099	0.56	0.05	bon	0.50	0.11	Asph	0.47	0.02	insc	0.41	0.14
52	sdk	-0.56	0.34	sbb	0.49	0.10	BcDNA:LD32788	0.46	0.13	CG4484	0.40	0.23
53	cenG1A	0.55	0.22	SoxN	-0.49	0.03	Cf2	-0.46	0.47	Tsf2	0.40	0.21
54	Vha16	0.54	0.01	aop	-0.48	0.01	CG9638	0.46	0.05
55	BcDNA:LD23587	0.54	0.20	CG3764	0.47	0.05	CG14762	-0.46	0.05
56	CG18604	0.54	0.02	CanA-14F	0.47	0.01	CG11266	0.45	0.06
57	Trn	0.52	0.07	CG16953	0.47	0.10	Eip93F	-0.44	0.06
58	CG15236	-0.52	0.06	CG15236	-0.47	0.06	CG9413	0.44	0.60
59	fng	0.52	0.56	Trn	0.45	0.02	Abd-B	0.44	0.06
60	did	-0.51	0.18	Cka	-0.45	0.12	CG6707	0.43	0.75
61	CG11537	0.51	0.33	Ptp4E	0.44	0.79	BcDNA:LD21720	-0.43	0.12
62	CG10494	-0.51	0.26	BG:DS04929.1	0.44	0.03	Cyp49a1	-0.43	0.00
63	CG3534	-0.50	0.14	CG18854	0.44	0.06	CG8791	-0.42	0.03
64	pdm2	-0.50	0.20	vri	-0.44	0.00	Sh	-0.42	0.11
65	CG8451	-0.50	0.06	CG9924	-0.43	0.17	CG15658	0.42	0.10
66	Eip71CD	-0.49	0.09	dco	0.43	0.02	l(2)03709	0.41	0.13
67	gish	0.49	0.04	lack	0.43	0.08	CG6803	0.41	0.01
68	Aef1	-0.49	0.11	CG8791	-0.43	0.03	CG15628	0.41	0.11
69	GLaz	0.48	0.11	CG9664	0.43	0.34	Cyp310a1	-0.41	0.00
70	dco	0.47	0.02	CG5087	-0.43	0.06	BicD	-0.41	0.07
71	sbb	0.45	0.10	CG14989	-0.42	0.07	tsl	-0.41	0.00
72	BcDNA:LD21720	0.45	0.12	CG6064	0.42	0.01	CG7283	0.40	0.00
73	CG1814	0.44	0.00	CG18375	0.42	0.00
74	CG6199	0.43	0.26	ATPCL	0.41	0.00
75	CG4851	-0.42	0.19	puc	-0.41	0.01
76	CG16971	0.41	0.17	CG9638	-0.41	0.05
77	Sap47	0.40	0.05	CG6707	0.41	0.75
78	M(2)21AB	0.40	0.17	CG17646	-0.41	0.02
79	CG4452	0.40	0.03	Atet	0.40	0.08
80				Cf2	-0.40	0.47

Factor analysis for putative targets of miRNAs. There were 203 candidate genes and a four-factor model was fit. The genes that loaded with a value greater than 0.40 are listed here. For each factor, the first column is the gene symbol name from [37] and the second column is the loading value for that gene. Genes are considered as loading 'significantly' if the absolute value of the loading value is ≥ 0.40. Genes are considered as loading 'high' if the absolute value of loading value is ≥ 0.70. The third column for each factor is the the P-value for the individual gene expression value regression on male body size (p₁).
Coffman et al. Genome Biology 2005 6:R53 doi:10.1186/gb-2005-6-6-r53

Table 4