Genome Biology

official impact factor 6.89

Open Access Highly Access

Single-feature polymorphism discovery in the barley transcriptome

Nils Rostoks, Justin O Borevitz*, Peter E Hedley, Joanne Russell, Sharon Mudie, Jenny Morris, Linda Cardle, David F Marshall and Robbie Waugh*

Genome Biology 2005, 6:R54 doi:10.1186/gb-2005-6-6-r54

Accesses  

  • Last 30 days: 60 accesses
  • Last year: 821 accesses
  • All time: 10982 accesses

Cited by

BioMed Central: 15 citations

Research article   Open Access

Generalized shrinkage F-like statistics for testing an interaction term in gene expression analysis in the presence of heteroscedasticity

Jie Yang, George Casella, Lauren M McIntyre BMC Bioinformatics 2011, 12:427 (1 November 2011)

Research article   Open Access

A simple optimization can improve the performance of single feature polymorphism detection by Affymetrix expression arrays

Youko Horiuchi, Yoshiaki Harushima, Hironori Fujisawa, Takako Mochizuki, Masanori Kawakita, Takayuki Sakaguchi, Nori Kurata BMC Genomics 2010, 11:315 (20 May 2010)

Research article   Open Access Highly Accessed

Complementary genetic and genomic approaches help characterize the linkage group I seed protein QTL in soybean

Yung-Tsi Bolon, Bindu Joseph, Steven B Cannon, Michelle A Graham, Brian W Diers, Andrew D Farmer, Gregory D May, Gary J Muehlbauer, James E Specht, Zheng Tu, Nathan Weeks, Wayne W Xu, Randy C Shoemaker, Carroll P Vance BMC Plant Biology 2010, 10:41 (3 March 2010)

Research   Open Access

Candidate genes for alcohol preference identified by expression profiling in alcohol-preferring and -nonpreferring reciprocal congenic rats

Tiebing Liang, Mark W Kimpel, Jeanette N McClintick, Ashley R Skillman, Kevin McCall, Howard J Edenberg, Lucinda G Carr Genome Biology 2010, 11:R11 (3 February 2010)

Transcriptional profiling of specific regions of inbred rat brains reveals genes associated with alcohol preference in a known QTL locus on chromosome 4

Research article   Open Access

Oligonucleotide array discovery of polymorphisms in cultivated tomato (Solanum lycopersicum L.) reveals patterns of SNP variation associated with breeding

Sung-Chur Sim, Matthew D Robbins, Charles Chilcott, Tong Zhu, David M Francis BMC Genomics 2009, 10:466 (9 October 2009)

Methodology article   Open Access

Single-feature polymorphism discovery by computing probe affinity shape powers

Wayne Xu, Seungho Cho, S Samuel Yang, Yung-Tsi Bolon, Hatice Bilgic, Haiyan Jia, Yanwen Xiong, Gary J Muehlbauer BMC Genetics 2009, 10:48 (26 August 2009)

Research article   Open Access Highly Accessed

Comparative transcriptomics in the Triticeae

Andreas W Schreiber, Tim Sutton, Rico A Caldo, Elena Kalashyan, Ben Lovell, Gwenda Mayo, Gary J Muehlbauer, Arnis Druka, Robbie Waugh, Roger P Wise, Peter Langridge, Ute Baumann BMC Genomics 2009, 10:285 (29 June 2009)

Research article   Open Access

Discovery and mapping of single feature polymorphisms in wheat using Affymetrix arrays

Amy N Bernardo, Peter J Bradbury, Hongxiang Ma, Shengwa Hu, Robert L Bowden, Edward S Buckler, Guihua Bai BMC Genomics 2009, 10:251 (29 May 2009)

Research article   Open Access

Detection and validation of single feature polymorphisms using RNA expression data from a rice genome array

Sung-Hyun Kim, Prasanna R Bhat, Xinping Cui, Harkamal Walia, Jin Xu, Steve Wanamaker, Abdelbagi M Ismail, Clyde Wilson, Timothy J Close BMC Plant Biology 2009, 9:65 (29 May 2009)

Methodology article   Open Access

SNEP: Simultaneous detection of nucleotide and expression polymorphisms using Affymetrix GeneChip

Hironori Fujisawa, Youko Horiuchi, Yoshiaki Harushima, Toyoyuki Takada, Shinto Eguchi, Takako Mochizuki, Takayuki Sakaguchi, Toshihiko Shiroishi, Nori Kurata BMC Bioinformatics 2009, 10:131 (6 May 2009)

Methodology article   Open Access

Detection of genomic deletions in rice using oligonucleotide microarrays

Myron Bruce, Ann Hess, Jianfa Bai, Ramil Mauleon, M Genaleen Diaz, Nobuko Sugiyama, Alicia Bordeos, Guo-Liang Wang, Hei Leung, Jan E Leach BMC Genomics 2009, 10:129 (25 March 2009)

Database   Open Access

TriMEDB: A database to integrate transcribed markers and facilitate genetic studies of the tribe Triticeae

Keiichi Mochida, Daisuke Saisho, Takuhiro Yoshida, Tetsuya Sakurai, Kazuo Shinozaki BMC Plant Biology 2008, 8:72 (30 June 2008)

Methodology article   Open Access

Identification of SNPs and INDELS in swine transcribed sequences using short oligonucleotide microarrays

Steve R Bischoff, Shengdar Tsai, Nicholas E Hardison, Abby M York, Brad A Freking, Dan Nonneman, Gary Rohrer, Jorge A Piedrahita BMC Genomics 2008, 9:252 (29 May 2008)

Research article   Open Access

Detection and validation of single feature polymorphisms in cowpea (Vigna unguiculata L. Walp) using a soybean genome array

Sayan Das, Prasanna R Bhat, Chinta Sudhakar, Jeffrey D Ehlers, Steve Wanamaker, Philip A Roberts, Xinping Cui, Timothy J Close BMC Genomics 2008, 9:107 (28 February 2008)

Research article   Open Access

Array-based genotyping and expression analysis of barley cv. Maythorpe and Golden Promise

Harkamal Walia, Clyde Wilson, Pascal Condamine, Abdelbagi M Ismail, Jin Xu, Xinping Cui, Timothy J Close BMC Genomics 2007, 8:87 (30 March 2007)