Text-mining and information-retrieval services for molecular biology
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Corresponding authors: Martin Krallinger martink@cnb.uam.es - Alfonso Valencia valencia@cnb.uam.es
Genome Biology 2005, 6:224 doi:10.1186/gb-2005-6-7-224
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Proceedings
Elina Tjioe, Michael W Berry, Ramin Homayouni BMC Bioinformatics 2010, 11(Suppl 6):S14 (7 October 2010) |
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Fabio Rinaldi, Thomas Kappeler, Kaarel Kaljurand, Gerold Schneider, Manfred Klenner, Simon Clematide, Michael Hess, Jean-Marc von Allmen, Pierre Parisot, Martin Romacker, Therese Vachon Genome Biology 2008, 9(Suppl 2):S13 (1 September 2008) |
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Software
Introducing meta-services for biomedical information extraction Florian Leitner, Martin Krallinger, Carlos Rodriguez-Penagos, Jörg Hakenberg, Conrad Plake, Cheng-Ju Kuo, Chun-Nan Hsu, Richard Tsai, Hsi-Chuan Hung, William W Lau, Calvin A Johnson, Rune Sætre, Kazuhiro Yoshida, Yan Chen, Sun Kim, Soo-Yong Shin, Byoung-Tak Zhang, William A Baumgartner, Lawrence Hunter, Barry Haddow, Michael Matthews, Xinglong Wang, Patrick Ruch, Frédéric Ehrler, Arzucan Özgür, Güneş Erkan, Dragomir R Radev, Michael Krauthammer, ThaiBinh Luong, Robert Hoffmann, Chris Sander, Alfonso Valencia et al. Genome Biology 2008, 9(Suppl 2):S6 (1 September 2008) |
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Improving protein function prediction methods with integrated literature data Aaron P Gabow, Sonia M Leach, William A Baumgartner, Lawrence E Hunter, Debra S Goldberg BMC Bioinformatics 2008, 9:198 (15 April 2008) |
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Database
MeInfoText: associated gene methylation and cancer information from text mining Yu-Ching Fang, Hsuan-Cheng Huang, Hsueh-Fen Juan BMC Bioinformatics 2008, 9:22 (14 January 2008) |
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New directions in biomedical text annotation: definitions, guidelines and corpus construction W John Wilbur, Andrey Rzhetsky, Hagit Shatkay BMC Bioinformatics 2006, 7:356 (25 July 2006) |
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Hua Xu, Marianthi Markatou, Rositsa Dimova, Hongfang Liu, Carol Friedman BMC Bioinformatics 2006, 7:334 (5 July 2006) |
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Comprehensive curation and analysis of global interaction networks in Saccharomyces cerevisiae Teresa Reguly, Ashton Breitkreutz, Lorrie Boucher, Bobby-Joe Breitkreutz, Gary C Hon, Chad L Myers, Ainslie Parsons, Helena Friesen, Rose Oughtred, Amy Tong, Chris Stark, Yuen Ho, David Botstein, Brenda Andrews, Charles Boone, Olga G Troyanskya, Trey Ideker, Kara Dolinski, Nizar N Batada, Mike Tyers Journal of Biology 2006, 5:11 (8 June 2006) A new literature-based yeast database documents over 33,000 biological interactions, manually curated from the primary literature, and provides an invaluable resource to benchmark high-throughput methods in the study of complex networks.
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Methodology article
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