|
Interspecies substitution rates |
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| Gene |
Alignment length |
Number of reads |
Frequency per kilobase |
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|
|
|
||||||
| M f. |
M.m. |
M.n. |
m vs n* |
m vs f* |
n vs f* |
||
|
|
|||||||
| ADH1B |
819 |
8 |
5 |
14 |
0.00 |
0.00 |
2.44 |
| AFP |
537 |
1 |
3 |
1 |
11.17 |
7.45 |
3.72 |
| ALB |
2047 |
> 20 |
> 20 |
> 20 |
0.00 |
0.49 |
0.49 |
| AMBP |
731 |
1 |
5 |
4 |
4.10 |
1.37 |
5.47 |
| ANGPTL3 |
371 |
1 |
1 |
2 |
2.70 |
0.00 |
2.70 |
| APOA1 |
746 |
10 |
76 |
2 |
10.72 |
4.02 |
5.36 |
| APOA2 |
431 |
3 |
4 |
5 |
6.96 |
4.64 |
2.32 |
| APOC4 |
312 |
3 |
1 |
1 |
16.03 |
12.82 |
16.03 |
| APOE |
217 |
2 |
2 |
2 |
4.61 |
4.61 |
0.00 |
| APOH |
1007 |
4 |
14 |
14 |
2.98 |
0.00 |
2.98 |
| B2M |
587 |
1 |
90 |
1 |
0.00 |
11.93 |
11.93 |
| EEF1A1 |
920 |
7 |
>20 |
7 |
0.00 |
0.00 |
0.00 |
| FGA |
379 |
3 |
6 |
1 |
7.92 |
0.00 |
7.92 |
| FGB |
407 |
3 |
43 |
11 |
2.46 |
0.00 |
2.46 |
| FGG |
694 |
3 |
24 |
9 |
1.44 |
1.44 |
2.88 |
| HPR |
567 |
2 |
20 |
12 |
3.53 |
1.76 |
1.76 |
| RPL9 |
680 |
1 |
35 |
1 |
4.41 |
4.41 |
0.00 |
| SERPINC1 |
787 |
1 |
3 |
1 |
1.27 |
2.54 |
1.27 |
| TTR |
599 |
5 |
2 |
6 |
5.01 |
3.34 |
5.01 |
| UBC |
460 |
1 |
40 |
1 |
0.00 |
0.00 |
0.00 |
| UGT2B7 |
228 |
1 |
13 |
1 |
8.77 |
0.00 |
8.77 |
| Mean |
5.88 |
3.80 |
5.22 |
||||
| Median |
3.53 |
1.44 |
2.70 |
||||
| SD |
4.38 |
3.80 |
4.19 |
||||
|
*Pair wise interspecies substitution frequencies computed on a gene-by-gene basis M.f., Macaca fascicularis; M.m., M. mulatta; M.n., M. nemestrina. | |||||||
Magness et al. Genome Biology 2005 6:R60 doi:10.1186/gb-2005-6-7-r60 |
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