Research article  

Eukaryotic transcriptomics in silico: Optimizing cDNA-AFLP efficiency

Kai N Stölting, Gerrit Gort, Christian Wüst, Anthony B Wilson BMC Genomics 2009, 10:565 (30 November 2009)

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Methodology article  

Absolute quantification of the budding yeast transcriptome by means of competitive PCR between genomic and complementary DNAs

Fumihito Miura, Noriko Kawaguchi, Mikio Yoshida, Chihiro Uematsu, Keiji Kito, Yoshiyuki Sakaki, Takashi Ito BMC Genomics 2008, 9:574 (29 November 2008)

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Research article  

Identification of Pou5f1, Sox2, and Nanog downstream target genes with statistical confidence by applying a novel algorithm to time course microarray and genome-wide chromatin immunoprecipitation data

Alexei A Sharov, Shinji Masui, Lioudmila V Sharova, Yulan Piao, Kazuhiro Aiba, Ryo Matoba, Li Xin, Hitoshi Niwa, Minoru SH Ko BMC Genomics 2008, 9:269 (3 June 2008)

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Research article  

Modelling and measuring single cell RNA expression levels find considerable transcriptional differences among phenotypically identical cells

Tatiana Subkhankulova, Michael J Gilchrist, Frederick J Livesey BMC Genomics 2008, 9:268 (3 June 2008)

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Research article  

Effects of aging and calorie restriction on the global gene expression profiles of mouse testis and ovary

Alexei A Sharov, Geppino Falco, Yulan Piao, Suresh Poosala, Kevin G Becker, Alan B Zonderman, Dan L Longo, David Schlessinger, Minoru SH Ko BMC Biology 2008, 6:24 (3 June 2008)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central | Editor’s summary

Research article  

Validation of oligoarrays for quantitative exploration of the transcriptome

Vigdis Nygaard, Fang Liu, Marit Holden, Winston P Kuo, Jeff Trimarchi, Lucila Ohno-Machado, Connie L Cepko, Arnoldo Frigessi, Ingrid K Glad, Mark Wiel, Eivind Hovig, Heidi Lyng BMC Genomics 2008, 9:258 (30 May 2008)

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Research article  

Evidence against the energetic cost hypothesis for the short introns in highly expressed genes

Yi-Fei Huang, Deng-Ke Niu BMC Evolutionary Biology 2008, 8:154 (20 May 2008)

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Methodology article  

Selection of long oligonucleotides for gene expression microarrays using weighted rank-sum strategy

Guangan Hu, Manuel Llinás, Jingguang Li, Peter Preiser, Zbynek Bozdech BMC Bioinformatics 2007, 8:350 (19 September 2007)

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