Method
Validation and refinement of gene-regulatory pathways on a network of physical interactions
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* Corresponding author: Trey Ideker trey@bioeng.ucsd.edu
- † Equal contributors
1 Center for Biomolecular Science and Engineering, Baskin School of Engineering, University of California at Santa Cruz, Santa Cruz, CA 95064, USA
2 Department of Bioengineering, University of California at San Diego, La Jolla, CA 92093, USA
3 Computer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, Cambridge, MA 02139, USA
Genome Biology 2005, 6:R62 doi:10.1186/gb-2005-6-7-r62
Published: 1 July 2005Additional files
Additional File 1:
Table S1 gives the internal validation for 17 out of 24 restricted network models; Table S2 lists the correlations between swi4δ and gcn4δ data and Rosetta and the new experiments; Table S3 gives the restricted subsets used to evaluate the reproducibility; and Table S4 gives the gene sets for external validation.
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