Identification of cyanobacterial non-coding RNAs by comparative genome analysis

Ilka M Axmann^*¹ , Philip Kensche^*¹^,2 , Jörg Vogel³ , Stefan Kohl¹ , Hanspeter Herzel² and Wolfgang R Hess¹^,4

¹Humboldt-University, Department of Biology/Genetics, Chausseestrasse, D-Berlin, Germany

²Humboldt-University, Institute for Theoretical Biology, Invalidenstrasse, Berlin, Germany

³Max Planck Institute for Infection Biology, Schumannstrasse, Berlin, Germany

⁴University Freiburg, Institute of Biology II/Experimental Bioinformatics, Schänzlestrasse, Freiburg, Germany

author email corresponding author email* Contributed equally

Genome Biology 2005, 6:R73doi:10.1186/gb-2005-6-9-r73


Published:	17 August 2005

Subject areas: Bioinformatics, Genome studies, Microbiology and parasitology

Additional files

Additional data file 1:

Figures showing the determination of half-lifes for several ncRNAs (Figure S9) and the composition of cluster 53 (Figure S10).

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Additional data file 2:

Tables listing the genome versions used in this study and details of intergenic regions (Table S4), the parameters for the initial local alignment of intergenic spacer regions, the clustering step and ALIFOLDZ (Table S5) and the sequences of oligonucleotides used in this study (Table S3).

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