Table 2 |
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|
Summary of identified ncRNA genes in Prochlorococcus MED4 and their orthologues in three related strains of marine cyanobacteria |
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|
Strain |
RNA gene name |
CLID |
Coordinates of RNA gene |
Length of RNA in nucleotides |
Adjacent protein-coding genes |
Orientation |
|
|
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|
MED4 |
yfr1 |
257 |
Complement (1000744..1000797) |
54 |
trxA and guaB |
← ← ← |
|
yfr2 |
194 |
346828..346921 |
94 |
PMM0363 and PMM0364 |
→ → → |
|
|
yfr3 |
194 |
654511..654604 |
95 |
PMM0686 and PMM0687 |
→ → ← |
|
|
yfr4 |
194 |
383389..383483 |
94 |
PMM0404 and phdC |
← → → |
|
|
yfr5 |
NP |
Complement (972088..972176) |
89 |
PMM1027 and PMM1028 |
→ ← → |
|
|
yfr6 |
53 |
Complement (627729..627972 |
244 |
PMM0659 and PMM0660 |
→ ← ← |
|
|
yfr7 |
51 |
652625..652844 |
220 |
purK and PMM0684 |
→ → → |
|
|
SS120 |
yfr2 |
84 |
Complement (556612..556701) |
90 |
rpsU and Pro0591 |
← ← ← |
|
yfr6 |
53 |
Complement (923780..924018) |
239 |
Pro1007 and purK |
→ ← ← |
|
|
yfr7 |
51 |
Complement (924466..924640) |
175 |
Pro1007 and purK |
→ ← ← |
|
|
MIT 9313 |
yfr1 |
257 |
1220973..1221029 |
57 |
guaB and trxA |
→ → → |
|
yfr2 |
NP |
Complement (1667304..1667390) |
87 |
PMT1567 and PMT1568 |
→ ← ← |
|
|
yfr7 |
NP |
727045..727219 (complementary to PMT0670) |
175 |
purK and PMT0671 |
→ → ← |
|
|
WH 8102 |
yfr1 |
257 |
Complement (706826..706881) |
56 |
trxA and guaB |
← ← ← |
|
yfr2 |
NP |
1127972..1128056 |
NT |
Overlapping SYNW1139 |
||
|
yfr3 |
NP |
1131773..1131856 |
NT |
SYNW1140 and SYNW1141 |
→ → ← |
|
|
yfr7 |
NP |
Complement (1302885..1303058) (complementary to SYNW1307) |
174 |
SYNW1306 and purK |
→ ← ← |
|
|
|
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|
The genome positions and names of protein coding genes refer to the genome versions indicated in the Additional data file 2 (Table S4). The cluster identifier (CLID) is identical to that used in Table 1. NP, not directly predicted by the pipeline; NT, not experimentally tested. |
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|
Axmann et al. Genome Biology 2005 6:R73 doi:10.1186/gb-2005-6-9-r73 |
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