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A computational method to predict genetically encoded rare amino acids in proteins

Barnali N Chaudhuri and Todd O Yeates*

Genome Biology 2005, 6:R79 doi:10.1186/gb-2005-6-9-r79

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Research article   Open Access Highly Accessed

Mining prokaryotic genomes for unknown amino acids: a stop-codon-based approach

Masashi Fujita, Hisaaki Mihara, Susumu Goto, Nobuyoshi Esaki, Minoru Kanehisa BMC Bioinformatics 2007, 8:225 (28 June 2007)

Abstract | Full text | PDF | PubMed | Editor’s summary

As two rare amino acids are stop codon-encoded, a 23rd undiscovered amino acid might also be, but a systematic search for 'readthrough proteins’ in prokaryotes showed no trace of an additional stop codon-encoded amino acid.

Methodology article   Open Access

Hon-yaku: a biology-driven Bayesian methodology for identifying translation initiation sites in prokaryotes

Yuko Makita, Michiel JL de Hoon, Antoine Danchin BMC Bioinformatics 2007, 8:47 (8 February 2007)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

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