Table 5

Breakdown of transcript and peptide sets used in the variant analyses


Total set
Full-length cDNAs
Transcript isoforms
Peptide encoding transcripts
Peptide isoforms
Domain combinations

Loci
687
676
676
639
639
639
Variants
-
5,877
4,496
2,358
1,469
1,080

Unique transcripts and unique peptides were identified by the Isoform Transcript Set (ITS) and Isoform Peptide Set (IPS) sequences identified by Carninci and coworkers [20].

Forrest et al. Genome Biology 2006 7:R5   doi:10.1186/gb-2006-7-1-r5