Method
Identifying repeat domains in large genomes
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* Corresponding author: Degui Zhi dzhi@ucsd.edu
1 Bioinformatics Program, University of California, San Diego, CA 92093-0419, USA
2 Department of Computer Science and Engineering, University of California, San Diego, CA 92093-0114, USA
3 Department of Genetics, Harvard Medical School, Boston, MA 02115, USA
4 School of Informatics and Center for Genomics and Bioinformatics, Indiana University, Bloomington, IN 47408, USA
Genome Biology 2006, 7:R7 doi:10.1186/gb-2006-7-1-r7
Published: 31 January 2006Additional files
Additional File 1:
A zipped file of browsable HTML files with a complete list of the connected components in the repeat domain graph of human Repbase.
Format: GZ Size: 2.1MB Download file
Additional File 2:
The full version of Table 1. The list is sorted by the total length of shared domains.
Format: XLS Size: 30KB Download file
This file can be viewed with: Microsoft Excel Viewer
Additional File 3:
Labeling follows that of Figure 2b. The three Y-forks are highlighted green.
Format: PDF Size: 30KB Download file
This file can be viewed with: Adobe Acrobat Reader
Additional File 4:
An analysis of the comparative repeat domain graph from mouse and rat RepeatScout repeat libraries.
Format: DOC Size: 1.2MB Download file
This file can be viewed with: Microsoft Word Viewer
Additional File 5:
An example of how palindromic sequences are handled by our revised algorithm.
Format: DOC Size: 142KB Download file
This file can be viewed with: Microsoft Word Viewer
Additional File 6:
Modified ABA program and the perl scripts used for analyzing the repeat domain graphs.
Format: TAR Size: 60KB Download file