Figure 2.

Repeat domain structure and repeat domain graph. (a) Diagram of repeat domains shared between RICKSHA and other repeat families. RICKSHA and RICKSHA_0 have 79 bp inverted terminal repeats. In addition, RICKSHA shares some sequences from retroviral elements ERVL and MLT2B. (b) Repeat domain graph of the same set of sequences. Each sequence is represented by a path from a source to a sink vertex, where source and sinks are labeled with the ID number in (a). Negative signs refer to the reverse complement sequences (see Results section). Similar parts between sequences are glued into shared edges. Edge label: the number inside the parentheses is the multiplicity and the number outside the parentheses is the length, multiplicity one is omitted.