Genome Biology

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Open Access

A gold standard set of mechanistically diverse enzyme superfamilies

Shoshana D Brown, John A Gerlt, Jennifer L Seffernick and Patricia C Babbitt*

Genome Biology 2006, 7:R8 doi:10.1186/gb-2006-7-1-r8

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BioMed Central: 5 citations

Proceedings   Open Access

Cutoff Scanning Matrix (CSM): structural classification and function prediction by protein inter-residue distance patterns

Douglas EV Pires, Raquel C de Melo-Minardi, Marcos A dos Santos, Carlos H da Silveira, Marcelo M Santoro, Wagner Meira BMC Genomics 2011, 12(Suppl 4):S12 (22 December 2011)

Methodology article   Open Access Highly Accessed

Improving classification in protein structure databases using text mining

Antonis Koussounadis, Oliver C Redfern, David T Jones BMC Bioinformatics 2009, 10:129 (5 May 2009)

Proceedings   Open Access

Towards structured output prediction of enzyme function

Katja Astikainen, Liisa Holm, Esa Pitkänen, Sandor Szedmak, Juho Rousu BMC Proceedings 2008, 2(Suppl 4):S2 (17 December 2008)

Software   Open Access Highly Accessed

MotifCluster: an interactive online tool for clustering and visualizing sequences using shared motifs

Micah Hamady, Jeremy Widmann, Shelley D Copley, Rob Knight Genome Biology 2008, 9:R128 (15 August 2008)

MotifCluster finds related motifs in a set of sequences and clusters the sequences into families using the motifs they contain.

Research article   Open Access Highly Accessed

High precision multi-genome scale reannotation of enzyme function by EFICAz

Adrian K Arakaki, Weidong Tian, Jeffrey Skolnick BMC Genomics 2006, 7:315 (13 December 2006)