|
Summary of gold and silver standard families |
||||
| Superfamily |
Family |
EC number* |
Number of sequences (gold/silver) |
Number of structures |
|
|
||||
| Amidohydrolase |
Aryldialkylphosphatase |
3.1.8.1 |
2/3 |
0 |
| Phosphotriesterase |
3.1.8.1 |
7/8 |
12 |
|
| Membrane dipeptidase |
3.4.13.19 |
1/1 |
2 |
|
| N-acetylglucosamine-6-phosphate deacetylase |
3.5.1.25 |
1/54 |
2 |
|
| Urease |
3.5.1.5 |
100/107 |
35 |
|
| N-acyl-D-amino-acid deacylase |
3.5.1.81 |
3/11 |
8 |
|
| D-hydantoinase |
3.5.2.2 |
10/25 |
4 |
|
| L-hydantoinase |
3.5.2.2 |
3/3 |
1 |
|
| Dihydroorotase1 |
3.5.2.3 |
3/79 |
0 |
|
| Dihydroorotase2 |
3.5.2.3 |
13/13 |
0 |
|
| Dihydroorotase3 |
3.5.2.3 |
7/43 |
1 |
|
| Allantoinase |
3.5.2.5 |
4/7 |
0 |
|
| Imidazolonepropionase |
3.5.2.7 |
1/29 |
0 |
|
| Cytosine deaminase |
3.5.4.1 |
9/24 |
7 |
|
| Adenine deaminase |
3.5.4.2 |
1/24 |
0 |
|
| Guanine deaminase |
3.5.4.3 |
11/34 |
0 |
|
| Adenosine deaminase |
3.5.4.4 |
10/20 |
17 |
|
| AMP deaminase |
3.5.4.6 |
28/31 |
0 |
|
| Hydroxydechloroatrazine ethylaminohydrolase |
3.5.99.3 |
1/2 |
0 |
|
| N-isopropylammelide isopropylaminohydrolase |
3.5.99.4 |
1/1 |
0 |
|
| 1-Aminocyclopropane-1-carboxylate deaminase |
3.5.99.7 |
1/1 |
0 |
|
| Atrazine chlorohydrolase |
3.8.1.8 |
1/1 |
0 |
|
| Glucuronate isomerase |
5.3.1.12 |
1/2 |
1 |
|
| Ammelide aminohydrolase |
NA |
2/2 |
0 |
|
| Isoaspartyl dipeptidase |
NA |
5/5 |
5 |
|
| Melamine deaminase |
NA |
1/1 |
0 |
|
| N-acetylgalactosamine-6-phosphate deacetylase |
NA |
3/5 |
0 |
|
| S-triazine hydrolase |
NA |
1/1 |
0 |
|
| TrzN |
NA |
1/1 |
0 |
|
| Crotonase |
Histone acetyltransferase |
2.3.1.48 |
11/12 |
0 |
| 3-Hydroxyisobutyryl-CoA hydrolase |
3.1.2.4 |
2/70 |
0 |
|
| 4-Chlorobenzoate dehalogenase |
3.8.1.7 |
1/7 |
2 |
|
| Methylmalonyl-CoA decarboxylase |
4.1.1.41 |
1/6 |
2 |
|
| Cyclohexa-1,5-dienecarbonyl-CoA hydratase |
4.2.1.100 |
1/3 |
0 |
|
| Enoyl-CoA hydratase |
4.2.1.17 |
54/293 |
7 |
|
| Methylglutaconyl-CoA hydratase |
4.2.1.18 |
2/5 |
1 |
|
| Methylglutaconyl-CoA hydratase 2 |
4.2.1.18 |
2/11 |
0 |
|
| Dodecenoyl-CoA delta-isomerase (mitochondrial) |
5.3.3.8 |
2/13 |
1 |
|
| Dodecenoyl-CoA delta-isomerase (peroxisomal) |
5.3.3.8 |
1/3 |
4 |
|
| Cyclohex-1-enecarboxyl-CoA hydratase |
NA |
1/2 |
0 |
|
| 1,4-Dihydroxy-2-napthoyl-CoA synthase |
NA |
2/56 |
4 |
|
| 2-Ketocyclohexanecarboxyl-CoA hydrolase |
NA |
1/1 |
0 |
|
| Crotonobetainyl-CoA hydratase |
NA |
2/15 |
0 |
|
| Delta(3,5)-delta(2,4)-dienoyl-CoA isomerase |
NA |
3/24 |
1 |
|
| Feruloyl-CoA hydratase/lyase |
NA |
5/18 |
0 |
|
| Enolase |
Enolase |
4.2.1.11 |
215/375 |
20 |
| Glucarate dehydratase |
4.2.1.40 |
26/31 |
7 |
|
| Galactonate dehydratase |
4.2.1.6 |
5/27 |
0 |
|
| Methylaspartate ammonia-lyase |
4.3.1.2 |
5/8 |
4 |
|
| Mandelate racemase |
5.1.2.2 |
2/3 |
6 |
|
| Muconate cycloisomerase |
5.5.1.1 |
14/26 |
5 |
|
| Chloromuconate cycloisomerase |
5.5.1.7 |
10/15 |
3 |
|
| Dipeptide epimerase |
NA |
2/57 |
3 |
|
| Ortho-succinylbenzoate synthase |
NA |
6/75 |
4 |
|
| Haloacid dehalogenase |
Polynucleotide 5'-hydroxyl-kinase carboxy-terminal phosphatase |
2.7.1.78 |
1/1 |
1 |
| Trehalose-phosphatase |
3.1.3.12 |
1/2 |
0 |
|
| Histidinol-phosphatase |
3.1.3.15 |
1/2 |
0 |
|
| Phosphoglycolate phosphatase |
3.1.3.18 |
1/14 |
0 |
|
| Phosphoglycolate phosphatase 2 |
3.1.3.18 |
1/10 |
0 |
|
| Sucrose-phosphatase |
3.1.3.24 |
5/13 |
0 |
|
| Phosphoserine phosphatase |
3.1.3.3 |
2/56 |
9 |
|
| Deoxy-D-mannose-octulosonate 8-phosphate phosphatase |
3.1.3.45 |
2/16 |
2 |
|
| 5'-Nucleotidase |
3.1.3.5 |
1/1 |
3 |
|
| 2-Deoxyglucose-6-phosphatase |
3.1.3.68 |
1/2 |
0 |
|
| Mannosyl-3-phosphoglycerate phosphatase |
3.1.3.70 |
1/3 |
0 |
|
| Phosphonoacetaldehyde hydrolase |
3.11.1.1 |
3/9 |
6 |
|
| P-type atpase |
3.6.3.- |
91/735 |
8 |
|
| 2-Haloacid dehalogenase |
3.8.1.2 |
7/20 |
8 |
|
| Beta-phosphoglucomutase |
5.4.2.6 |
1/21 |
3 |
|
| Pyridoxal phosphatase |
NA |
1/1 |
0 |
|
| Enolase-phosphatase |
NA |
1/20 |
0 |
|
| Epoxide hydrolase N-terminal phosphatase |
NA |
2/2 |
6 |
|
| Glycerol-3-phosphate phosphatase |
NA |
1/3 |
0 |
|
| mdp-1 |
NA |
1/2 |
2 |
|
| Vicinal oxygen chelate |
3,4-Dihydroxyphenylacetate 2,3-dioxygenase |
1.13.11.15 |
4/9 |
6 |
| Catechol 2,3-dioxygenase |
1.13.11.2 |
32/53 |
0 |
|
| 4-Hydroxyphenylpyruvate dioxygenase |
1.13.11.27 |
26/69 |
7 |
|
| 2,3-Dihydroxybiphenyl dioxygenase |
1.13.11.39 |
23/26 |
16 |
|
| 4-Hydroxymandelate synthase |
1.13.11.46 |
1/6 |
0 |
|
| Fosfomycin resistance protein FosA |
2.5.1.18 |
2/4 |
6 |
|
| Glyoxalase I |
4.4.1.5 |
12/58 |
9 |
|
| Methylmalonyl-CoA epimerase |
5.1.99.1 |
5/9 |
2 |
|
| 3-Methylcatechol 2,3-dioxygenase |
NA |
7/10 |
1 |
|
| 2,6-Dichlorohydroquinone dioxygenase |
NA |
3/3 |
0 |
|
| 2,3-Dihydroxy-p-cumate-3,4-dioxygenase |
NA |
2/3 |
0 |
|
| 2,2',3-Trihydroxybiphenyl dioxygenase |
NA |
4/4 |
0 |
|
| 1,2-Dihydroxynaphthalene dioxygenase |
NA |
6/17 |
0 |
|
| 3-Isopropylcatechol-2,3-dioxygenase |
NA |
2/3 |
0 |
|
| 2,4,5-Trihydroxytoluene oxygenase |
NA |
2/3 |
0 |
|
| Fosfomycin resistance protein FosB |
NA |
1/9 |
0 |
|
| Fosfomycin resistance protein FosX |
NA |
2/4 |
1 |
|
|
*Enzyme Commission Number for the primary reaction catalyzed by the family. Some families catalyze a characterized reaction for which no EC number has yet been assigned. The EC numbers for these families are designated as NA (not available). | ||||
Brown et al. Genome Biology 2006 7:R8 doi:10.1186/gb-2006-7-1-r8 |
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