Methodology article  

Detailed interrogation of trypanosome cell biology via differential organelle staining and automated image analysis

Richard J Wheeler, Keith Gull, Eva Gluenz BMC Biology 2012, 10:1 (3 January 2012)

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Research article  

Cathepsin K deficiency in mice induces structural and metabolic changes in the central nervous system that are associated with learning and memory deficits

Stephanie Dauth, Ruxandra F Sîrbulescu, Silvia Jordans, Maren Rehders, Linda Avena, Julia Oswald, Alexander Lerchl, Paul Saftig, Klaudia Brix BMC Neuroscience 2011, 12:74 (27 July 2011)

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Software  

BioIMAX: A Web 2.0 approach for easy exploratory and collaborative access to multivariate bioimage data

Christian Loyek, Nasir M Rajpoot, Michael Khan, Tim W Nattkemper BMC Bioinformatics 2011, 12:297 (21 July 2011)

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Software  

Gebiss: an ImageJ plugin for the specification of ground truth and the performance evaluation of 3D segmentation algorithms

Janos Kriston-Vizi, Ng Thong, Cheok Poh, Kwo Yee, Joan Ling, Rachel Kraut, Martin Wasser BMC Bioinformatics 2011, 12:232 (13 June 2011)

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Research  

Creation of a novel telomere-cutting endonuclease based on the EN domain of telomere-specific non-long terminal repeat retrotransposon, TRAS1

Kazutoshi Yoshitake, Hideyuki Aoyagi, Haruhiko Fujiwara Mobile DNA 2010, 1:13 (1 April 2010)

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Research article  

Using machine learning to speed up manual image annotation: application to a 3D imaging protocol for measuring single cell gene expression in the developing C. elegans embryo

Zafer Aydin, John I Murray, Robert H Waterston, William S Noble BMC Bioinformatics 2010, 11:84 (11 February 2010)

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Methodology article  

Edge detection in microscopy images using curvelets

Tobias Gebäck, Petros Koumoutsakos BMC Bioinformatics 2009, 10:75 (3 March 2009)

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Research article  

Lentivirus-mediated transgene delivery to the hippocampus reveals sub-field specific differences in expression

Lenneke WA van Hooijdonk, Muhammad Ichwan, Thomas F Dijkmans, Theo G Schouten, Marijke WA de Backer, Roger AH Adan, Fons J Verbeek, Erno Vreugdenhil, Carlos P Fitzsimons BMC Neuroscience 2009, 10:2 (13 January 2009)

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Software  

CellProfiler Analyst: data exploration and analysis software for complex image-based screens

Thouis R Jones, In Kang, Douglas B Wheeler, Robert A Lindquist, Adam Papallo, David M Sabatini, Polina Golland, Anne E Carpenter BMC Bioinformatics 2008, 9:482 (15 November 2008)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central

Research article  

Upregulated miR-146a expression in peripheral blood mononuclear cells from rheumatoid arthritis patients

Kaleb M Pauley, Minoru Satoh, Annie L Chan, Michael R Bubb, Westley H Reeves, Edward KL Chan Arthritis Research & Therapy 2008, 10:R101 (29 August 2008)

Abstract | Full text | PDF | PubMed | Cited on BioMed Central | F1000 Medicine | Editor’s summary

Methodology article  

Single cell cytometry of protein function in RNAi treated cells and in native populations

Peter LaPan, Jing Zhang, Jing Pan, Andrew Hill, Steven A Haney BMC Cell Biology 2008, 9:43 (1 August 2008)

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Research  

Wndchrm – an open source utility for biological image analysis

Lior Shamir, Nikita Orlov, D Mark Eckley, Tomasz Macura, Josiah Johnston, Ilya G Goldberg Source Code for Biology and Medicine 2008, 3:13 (8 July 2008)

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