Software
CellProfiler: image analysis software for identifying and quantifying cell phenotypes
1 Whitehead Institute for Biomedical Research, Cambridge, MA 02142, USA
2 Computer Sciences and Artificial Intelligence Laboratory, Massachusetts Institute of Technology, Cambridge, MA 02142, USA
3 Department of Radiology, Brigham and Women's Hospital, Boston, MA 02115, USA
4 Department of Biology, Massachusetts Institute of Technology, Cambridge, MA 02142, USA
Genome Biology 2006, 7:R100 doi:10.1186/gb-2006-7-10-r100
Published: 31 October 2006Additional files
Additional data file 1:
CellProfiler manual
Format: PDF Size: 819KB Download file
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Additional data file 2:
CellProfiler pipelines for experiments shown in this paper, listing the modules in the order used
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Additional data file 3:
CellProfiler modules by category, with their descriptions
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Additional data file 4:
Measurements made by CellProfiler modules
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Additional data file 5:
Data and image tools in CellProfiler, with their descriptions
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Additional data file 6:
Example from CellProfiler analysis of DNA content (cell cycle) in Drosophila Kc167 cells
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Additional data file 7:
Histograms of shape and texture features for wild-type cells
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Additional data file 8:
Measures for the cytoplasm-nucleus translocation assay (Figure 4) for which the Z' factor is above 0.5
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