Table 3

Multi-species CLICs of the OR repertoire
CLIC numbera
 Human
 Mouse
 Rat
 Dog
 Opossum
 Consensus size

Clustersb
 Genes (n)
 Clustersb
 Genes (n)
 Clustersb
 Genes (n)
 Clustersb
 Genes (n)
 Clustersb
 Genes (n)
1
 -
 0
 chr4@117.8
 15
 chr5@139.3
 15
 chr15@3.3
 4
 s13629@2.4
 6
 12
4
 chr1@155.4 chr1@156.2
 31
 chr1@173 chr1@174.2
 21
 chr13@89.5 chr13@90.2
 28
 chr38@19.8
 27
 s15142@1.8 s16926@0.2 s19280@0.6
 31
 29
5
 chr1@244.6
 56
 chr11@58.4 chr11@59.3 chr16@18.2 chr7@80.4
 49
 chr10@44.6 chr10@45.9 chr11@83.7 chr1@142.7
 79
 chr14@4.6 chr16@4.4 chr8@3.6
 53
 s13645@0.9
 18
 53
9
 chr3@99.5
 18
 chr16@58.1
 28
 chr11@42.2
 36
 chr33@8.3
 11
 s12721@4.5
 12
 17
11
 chr5@180.1 chr5@180.6
 5
 chr11@49.1
 16
 chr10@34.3 chr10@34.9
 19
 -
 0
 s16810@0.6
 5
 9
12
 chr6@28.1 chr6@28.5 chr6@29.4
 34
 chr13@20.9 chr17@35.5
 63
 chr17@50.6 chr17@51.3 chr20@0.8
 85
 chr35@28.1 chr35@29.2
 10
 s14804@0.5
 27
 41
16
 chr7@142.7 chr7@143.3
 21
 chr6@43
 23
 chr4@70.9
 20
 chr16@11.7
 19
 s12761@1.3
 24
 21
17
 chr9@35.9
 7
 chr4@43.7
 6
 chr5@60.2
 8
 chr11@53.8
 8
 -
 0
 8
19
 chr9@104.5
 12
 chr4@52.8
 5
 chr5@70.2
 11
 chr11@61.9
 12
 s18607@0.4
 22
 12
21
 chr9@122.5
 15
 chr2@36.7
 34
 chr3@16
 39
 chr9@52.6
 8
 s15087@1.4
 18
 22
23
 chr11@5.2
 103
 chr7@97.5 chr7@99.1
 146
 chr1@161.7
 149
 chr21@30.7
 111
 s15168@3.2 s16805@1.4
 149
 139
24
 chr11@6.8
 8
 chr7@100.9
 24
 chr1@164.2
 31
 chr21@32.6
 24
 -
 0
 26
25
 chr11@7.8
 8
 chr7@102.3
 41
 chr1@166
 47
 chr21@33.7
 9
 -
 0
 19
26
 chr11@48.4 chr11@50 chr11@51.3 chr11@55.7
 146
 chr2@87.6
 251
 chr3@71.6
 300
 chr18@50.7
 144
 s13644@1 s18549@1.3 s19209@1.4
 281
 266
27
 chr11@57.7 chr11@59.1
 42
 chr19@12.1
 76
 chr1@215.2 chr1@216.5
 66
 chr18@47.9 chr18@48.7
 40
 s12795@1.2 s12795@2.8 s12795@3.4
 111
 56
29
 chr11@123.6
 44
 chr9@38.9
 112
 chr8@39.3 chr8@41 chr8@42.7
 139
 chr5@13.2
 44
 s18579@6.8 s18622@0.4
 77
 69
30
 chr12@47.1
 8
 chr15@98.4
 7
 chr7@137.2
 8
 chr27@9.2
 22
 -
 0
 8
31
 chr12@54.1
 28
 chr10@129.3
 58
 chr7@5.4
 194
 chr10@19.4 chr10@3.1 chr27@3.2 chr3@34.2
 49
 s12526@0.2 s15221@0.8
 82
 54
32
 chr14@19.5 chr15@100.2 chr15@19.8
 46
 chr14@45.4 chr2@111.3
 64
 chr15@26.3 chr3@97.3
 68
 chr15@20.4 chr30@3.3
 39
 s11704@0.4 s19262@7
 74
 59
35
 chr14@21.2
 5
 chr14@47.5
 6
 chr15@27.9
 7
 chr15@21.6
 2
 s19262@4.7
 8
 6
39
 chr17@3.1
 16
 chr11@73.6
 43
 chr10@61
 49
 chr9@39.8
 15
 -
 0
 25
42
 chr19@9.2
 10
 chr9@19.4
 43
 chr8@16.2 chr8@18.1
 74
 chr20@54.4
 20
 -
 0
 24
45
 chr19@14.9
 14
 chr10@78.9
 8
 chr7@12.4
 16
 chr20@50.3
 41
 s11688@0.2
 11
 12
46
 chr19@15.9
 6
 chr8@71.2
 3
 chr16@18.2
 1
 chr20@49.3
 16
 s11661@2.3
 16
 5
48
 chrX@130.3
 9
 chrX@44.5 chrX@44.9
 3
 chrX@136.4 chrX@137.1
 5
 chrX@105.6
 3
 s11989@0.2
 9
 4

aThe CLICs are ordered according to genomic order in the human genome. For CLICs that do not contain human clusters, the human location that is syntenic to the region of the mouse OR cluster was considered (according to UCSC mm6 versus hg17 alignment net [56]). Only multi-species CLICs with at least five human genes are shown, in addition to CLIC #1, which is discussed in the text. The complete list of 251 CLICs appear in 1. bCluster names indicate the chromosome (or the scaffold for the opossum genome) followed by the genomic coordinates in megabases of the middle of the cluster. CLIC, clusters in conservation; OR, olfactory receptor; UCSC, University of California at Santa Cruz.

Aloni et al. Genome Biology 2006 7:R88   doi:10.1186/gb-2006-7-10-r88