Table 3

Multi-species CLICs of the OR repertoire

CLIC numbera

Human

Mouse

Rat

Dog

Opossum

Consensus size

Clustersb

Genes (n)

Clustersb

Genes (n)

Clustersb

Genes (n)

Clustersb

Genes (n)

Clustersb

Genes (n)


1

-

0

chr4@117.8

15

chr5@139.3

15

chr15@3.3

4

s13629@2.4

6

12

4

chr1@155.4 chr1@156.2

31

chr1@173 chr1@174.2

21

chr13@89.5 chr13@90.2

28

chr38@19.8

27

s15142@1.8 s16926@0.2 s19280@0.6

31

29

5

chr1@244.6

56

chr11@58.4 chr11@59.3 chr16@18.2 chr7@80.4

49

chr10@44.6 chr10@45.9 chr11@83.7 chr1@142.7

79

chr14@4.6 chr16@4.4 chr8@3.6

53

s13645@0.9

18

53

9

chr3@99.5

18

chr16@58.1

28

chr11@42.2

36

chr33@8.3

11

s12721@4.5

12

17

11

chr5@180.1 chr5@180.6

5

chr11@49.1

16

chr10@34.3 chr10@34.9

19

-

0

s16810@0.6

5

9

12

chr6@28.1 chr6@28.5 chr6@29.4

34

chr13@20.9 chr17@35.5

63

chr17@50.6 chr17@51.3 chr20@0.8

85

chr35@28.1 chr35@29.2

10

s14804@0.5

27

41

16

chr7@142.7 chr7@143.3

21

chr6@43

23

chr4@70.9

20

chr16@11.7

19

s12761@1.3

24

21

17

chr9@35.9

7

chr4@43.7

6

chr5@60.2

8

chr11@53.8

8

-

0

8

19

chr9@104.5

12

chr4@52.8

5

chr5@70.2

11

chr11@61.9

12

s18607@0.4

22

12

21

chr9@122.5

15

chr2@36.7

34

chr3@16

39

chr9@52.6

8

s15087@1.4

18

22

23

chr11@5.2

103

chr7@97.5 chr7@99.1

146

chr1@161.7

149

chr21@30.7

111

s15168@3.2 s16805@1.4

149

139

24

chr11@6.8

8

chr7@100.9

24

chr1@164.2

31

chr21@32.6

24

-

0

26

25

chr11@7.8

8

chr7@102.3

41

chr1@166

47

chr21@33.7

9

-

0

19

26

chr11@48.4 chr11@50 chr11@51.3 chr11@55.7

146

chr2@87.6

251

chr3@71.6

300

chr18@50.7

144

s13644@1 s18549@1.3 s19209@1.4

281

266

27

chr11@57.7 chr11@59.1

42

chr19@12.1

76

chr1@215.2 chr1@216.5

66

chr18@47.9 chr18@48.7

40

s12795@1.2 s12795@2.8 s12795@3.4

111

56

29

chr11@123.6

44

chr9@38.9

112

chr8@39.3 chr8@41 chr8@42.7

139

chr5@13.2

44

s18579@6.8 s18622@0.4

77

69

30

chr12@47.1

8

chr15@98.4

7

chr7@137.2

8

chr27@9.2

22

-

0

8

31

chr12@54.1

28

chr10@129.3

58

chr7@5.4

194

chr10@19.4 chr10@3.1 chr27@3.2 chr3@34.2

49

s12526@0.2 s15221@0.8

82

54

32

chr14@19.5 chr15@100.2 chr15@19.8

46

chr14@45.4 chr2@111.3

64

chr15@26.3 chr3@97.3

68

chr15@20.4 chr30@3.3

39

s11704@0.4 s19262@7

74

59

35

chr14@21.2

5

chr14@47.5

6

chr15@27.9

7

chr15@21.6

2

s19262@4.7

8

6

39

chr17@3.1

16

chr11@73.6

43

chr10@61

49

chr9@39.8

15

-

0

25

42

chr19@9.2

10

chr9@19.4

43

chr8@16.2 chr8@18.1

74

chr20@54.4

20

-

0

24

45

chr19@14.9

14

chr10@78.9

8

chr7@12.4

16

chr20@50.3

41

s11688@0.2

11

12

46

chr19@15.9

6

chr8@71.2

3

chr16@18.2

1

chr20@49.3

16

s11661@2.3

16

5

48

chrX@130.3

9

chrX@44.5 chrX@44.9

3

chrX@136.4 chrX@137.1

5

chrX@105.6

3

s11989@0.2

9

4


aThe CLICs are ordered according to genomic order in the human genome. For CLICs that do not contain human clusters, the human location that is syntenic to the region of the mouse OR cluster was considered (according to UCSC mm6 versus hg17 alignment net [56]). Only multi-species CLICs with at least five human genes are shown, in addition to CLIC #1, which is discussed in the text. The complete list of 251 CLICs appear in 1. bCluster names indicate the chromosome (or the scaffold for the opossum genome) followed by the genomic coordinates in megabases of the middle of the cluster. CLIC, clusters in conservation; OR, olfactory receptor; UCSC, University of California at Santa Cruz.

Aloni et al. Genome Biology 2006 7:R88   doi:10.1186/gb-2006-7-10-r88

Open Data