Email updates

Keep up to date with the latest news and content from Genome Biology and BioMed Central.

Open Access Highly Accessed Research

An inventory of yeast proteins associated with nucleolar and ribosomal components

Eike Staub*, Sebastian Mackowiak and Martin Vingron

Author Affiliations

Department of Computational Molecular Biology, Max Planck Institute for Molecular Genetics, Berlin, Germany

For all author emails, please log on.

Genome Biology 2006, 7:R98  doi:10.1186/gb-2006-7-10-r98

Published: 26 October 2006

Additional files

Additional data file 1:

The first line contains abbreviations describing the column content: YORF, yeast open reading frame ID; Gene, gene symbol of yeast gene; Hs, orthology to human nucleolar protein; At, orthology to mouse ear cress nucleolar protein; It, link to nucleolar protein via Y2H interaction in Ito dataset; Ue, link to nucleolar protein via Y2H interaction in Uetz dataset; Ga, link to nucleolar protein via participation in a complex in Gavin data set; Ho, link to nucleolar protein via participation in a complex in Ho data set; Kr, link to nucleolar protein via participation in a complex in Krogan data set; log(O), average posterior odds ratio Opost from all cross-validation runs (note that the proteins served as positive training cases); Pred., prediction result (nucleolar or not) according to a majority vote based on all cross-validation runs; Desc., concise description of protein function.

Format: TXT Size: 461KB Download file

Open Data

Additional file 2:

The first line contains abbreviations describing the column content. Gene, gene symbol of yeast gene; ORF, yeast open reading frame ID; Hs, orthology to human nucleolar protein; At, orthology to mouse ear cress nucleolar protein; It, link to nucleolar protein via Y2H interaction in Ito dataset; Ue, link to nucleolar protein via Y2H interaction in Uetz dataset; Ga, link to nucleolar protein via participation in a complex in Gavin data set; Ho, link to nucleolar protein via participation in a complex in Ho data set; Kr, link to nucleolar protein via participation in a complex in Krogan data set; log(O), average posterior odds ratio from all prediction runs in which the protein was not used for training; Desc., concise description of protein function. The listed proteins were all predicted to be not nucleolar based on a threshold of Opost < 0.4.

Format: TXT Size: 34KB Download file

Open Data