Research
Global analysis of mRNA stability in the archaeon Sulfolobus
-
* Corresponding author: Anders F Andersson anders@eps.berkeley.edu
1 Department of Gene Technology, School of Biotechnology, KTH - Royal Institute of Technology, AlbaNova University Center, SE-106 91 Stockholm, Sweden
2 Department of Earth and Planetary Science, University of California, Berkeley, Berkeley, CA 94720-4767, USA
3 Department of Molecular Evolution, Evolutionary Biology Center, Uppsala University, SE-752 36 Uppsala, Sweden
4 Department of Mathematics, KTH - Royal Institute of Technology, SE-100 44 Stockholm, Sweden
Genome Biology 2006, 7:R99 doi:10.1186/gb-2006-7-10-r99
Published: 26 October 2006Additional files
Additional data file 1:
A table with mRNA half-life data for 2,064 and 1,582 genes in S. solfataricus and S. acidocaldarius, respectively
Format: XLS Size: 3.1MB Download file
This file can be viewed with: Microsoft Excel Viewer
Additional data file 2:
Scatterplots of mRNA half-life for upstream (x-axis) versus downstream (y-axis) gene in gene pairs encoded on the same strand and separated by < 10 nucleotides in S. solfataricus
Format: PDF Size: 62KB Download file
This file can be viewed with: Adobe Acrobat Reader
Additional data file 3:
A scatterplot of mRNA half-lives of nine S. solfataricus genes, derived by qPCR (x-axis) and microarray (y-axis) analysis
Format: PDF Size: 19KB Download file
This file can be viewed with: Adobe Acrobat Reader
Additional data file 4:
A figure displaying the distributions of S. acidocaldarius mRNA half-lives for different functional categories of genes in the COG database
Format: PDF Size: 65KB Download file
This file can be viewed with: Adobe Acrobat Reader
Additional data file 5:
A figure showing mRNA half-life in relation to transcript abundance, putative operon length (in number of genes) and putative transcript length (in nucleotides) in S. acidocaldarius
Format: PDF Size: 133KB Download file
This file can be viewed with: Adobe Acrobat Reader
Additional data file 6:
Flow cytometry of S. solfataricus, showing cell size (left) and DNA content (right) distributions of samples collected at different time points after, and immediately before (0 minutes), actinomycin D addition
Format: BMP Size: 140KB Download file
