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Yeast protein-interaction assay false-positive rates: yeast datasets |
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| Dataset |
Number of interactions |
Derived false-positive rate* (%) |
Published false-positive rate (%) |
Average false-positive rate (%) |
|
|
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| Uetz et al. [35] |
854 |
46 [32] |
32 [24]†,47 [44], 50 [37], 51 [42] |
45 |
| Ito [36] |
4,393 |
89 [32] |
71 [24]†, 78 [41], 85 [37], 91 [44] |
83 |
| Gavin et al. [16] |
3,180 |
68 [32] |
14 [24]†, 22 [4], <72 (upper bound [20]) |
35 |
| Ho et al. [17] |
3,618 |
83 [32], 81, 82, 80 |
55 [24]†, <97 (upper bound [20]) |
76 |
| Jansen et al. [22] |
15,922 |
81, 79 |
- |
80 |
| Gavin et al. [27] |
18,137 |
78, 82, 86‡ |
- |
82 |
| Krogan et al. [28] |
14,317 (7,123 core) |
75, 79, 66‡ (59, 65, 37‡ core) |
- |
73 (54 core) |
| Overall |
51,419 |
72 |
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*This interaction assay false-positive rate is taken from D'haeseleer and Church [32] or derived using the method therein. Multiple values derive from choosing either the GRID [2] or MIPS [33] reference sets. ‡This interaction assay false-positive rate is calculated with the EPR server of Deane et al. [42]. †The mean of four values estimated from Table S3 of Lee et al. [24] by fitting the interaction set as a linear combination of true-positive (small scale interactions) and false-positive (random pairs) interactions. | ||||
Hart et al. Genome Biology 2006 7:120 doi:10.1186/gb-2006-7-11-120 |
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