Research
Identification of novel regulatory modules in dicotyledonous plants using expression data and comparative genomics
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* Corresponding author: Yves Van de Peer yves.vandepeer@psb.ugent.be
Department of Plant Systems Biology, Flanders Interuniversity Institute for Biotechnology (VIB), Ghent University, Technologiepark, B-9052 Ghent, Belgium
Genome Biology 2006, 7:R103 doi:10.1186/gb-2006-7-11-r103
Published: 7 November 2006Additional files
Additional data file 1:
(a) Location of 34 conserved motifs (found in co-expressed genes) in Arabidopsis promoters (2,445 genes). (b) Location of all conserved motifs in Arabidopsis promoters with more 3 kb un-annotated upstream space (with distance <1,000 bp between position in Arabidopsis and poplar; 125 genes)
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Additional data file 2:
Overview of motif organization in orthologous Arabidopsis (left) and poplar (right) targets for module 2.M7010
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Additional data file 3:
Stability of clusters of co-expressed genes when randomly removing experiments from the complete expression data set
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Additional data file 4:
Overview of the number of one-to-many and many-to-many orthologous relationships in phylogenetic trees
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Additional data file 5:
Overview of the 489 Arabidopsis microarray experiments
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Additional data file 6:
Overview of the TFBS identified using two-way clustering
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Additional data file 7:
Overview of the 139 cis-regulatory modules
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Additional data file 8:
The white boxes denote the cumulative fraction
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