Table 1

List of experiments

Experiment

Instrument

Treatment/labeling

Separation

Strain

Data contributors

Affiliation

Reference


gricat

LCQ Classic

ICAT

SCX

BY4741

J Ranish, T Ideker

ISB

[42]

cdc15_cdc23_newICAT

LCQ DECA

clICAT

SCX

BY4742

B Raught

ISB

-

cdc15_cdc23_oldICAT

LCQ DECA

ICAT

SCX

BY4742

B Raught

ISB

-

cdc15_cdc23_ICAT

LCQ DECA

clICAT

SCX

BY4742

B Raught

ISB

-

cdc23_amf_newICAT

LCQ DECA

clICAT

SCX

BY4742

B Raught

ISB

-

contFFE2Murea

LCQ DECA

clICAT

SCX

BY4741 ?

F Kregenow, R Aebersold

ISB

-

FFEY1

LCQ DECA

FFE

Unknown

BY4741 ?

F Kregenow, R Aebersold

ISB

-

FFEY1Scx

LCQ DECA

FFE

SCX

BY4741 ?

F Kregenow, R Aebersold

ISB

-

FFEY2

LCQ DECA XP

FFE

Unknown

BY4741 ?

F Kregenow, R Aebersold

ISB

-

PeteryeastIcatstdFFE

LCQ DECA XP

clICAT

Unknown

BY4741 ?

F Kregenow, R Aebersold

ISB

-

TSAAT000c

LCQ DECA XP

clICAT

SCX

BY2125

M Flory et al.

ISB

[43]

TSAAT030c

LCQ DECA XP

clICAT

SCX

BY2125

M Flory et al.

ISB

[43]

TSAAT060c

LCQ DECA XP

clICAT

SCX

BY2125

M Flory et al.

ISB

[43]

TSAAT090c

LCQ DECA XP

clICAT

SCX

BY2125

M Flory et al.

ISB

[43]

TSAAT120c

LCQ DECA XP

clICAT

SCX

BY2125

M Flory et al.

ISB

[43]

TSAAxT000old

LCQ DECA

ICAT

SCX

BY2125

M Flory

ISB

[43]

T00

LCQ DECA XP

ICAT

SCX

BY2125

M Flory

ISB

[43]

T30

LCQ DECA XP

ICAT

SCX

BY2125

M Flory

ISB

[43]

T50

LCQ DECA XP

ICAT

SCX

BY2125

M Flory

ISB

[43]

opd00034_YEAST

LCQ DECA XP

None

SCX

DBY8724

P Lu

University of Texas

[44]

opd00035_YEAST

LCQ DECA XP

None

SCX

DBY8724

P Lu

University of Texas

[44]

peroximalPrep0702

LCQ Classic

ICAT

SCX

BY4743

M Marelli et al.

ISB

[45]

Comp12vs12sizefrac

LCQ DECA

Iodoacetemide

SCX

BY4741

DB Martin

ISB

-

pxproteome

LCQ DECA

clICAT

SCX

BY4743

M Marelli et al.

ISB

[45]

Comp12vs12standSCX

LCQ DECA

Iodoacetemide

SCX

BY4741

DB Martin

ISB

-

YeastICAT

LCQ Classic

ICAT

SCX

Derivative of BY4741

J Ranish

ISB

-

PvM1

LCQ Classic

ICAT

SCX

BY4743

M Marelli et al.

ISB

[45]

peroximal_clICAT

LCQ Classic

clICAT

SCX

BY4743

M Marelli et al.

ISB

[45]

Ac30

LCQ DECA XP

clICAT

SCX

BY1782, BY2125

KR Serikawa et al.

University of Washington

[46]

yeast

LCQ DECA

Iodoacetemide

SCX

YPH499

Gygi et al.

Harvard Medical School

[47]

gel_msms

LCQ DECA

Iodoacetemide

Gel, SCX

BY4742

Ho et al.

MDS Proteomics

[30]

mudpit

LCQ DECA XP PLUS

Iodoacetemide

SDS-PAGE, SCX

YRP480

P Haynes et al.

University of Arizona

[48]

ipg_ief

LCQ DECA XP PLUS

Iodoacetemide

SDS-PAGE, IEF

YRP480

P Haynes et al.

University of Arizona

[48]

rp_int_selected

LCQ DECA XP PLUS

Iodoacetemide

SDS-PAGE

YRP480

P Haynes et al.

University of Arizona

[48]

rp_mass_selected

LCQ DECA XP PLUS

Iodoacetemide

SDS-PAGE

YRP480

P Haynes et al.

University of Arizona

[48]

sdspage

LCQ DECA XP PLUS

Iodoacetemide

SDS-PAGE

YRP480

P Haynes et al.

University of Arizona

[48]

YM_N14N15_DAYGly

LCQ Classic

None

Unknown

DBY8724

P Lu

University of Texas

[44]

YM_N14N15_DAYSer

LCQ Classic

None

Unknown

DBY8724

P Lu

University of Texas

[44]

YM_N14N15_SCYGly

LCQ Classic

None

Unknown

DBY8724

P Lu

University of Texas

[44]

YM_N14N15_SCYSer

LCQ Classic

None

Unknown

DBY8724

P Lu

University of Texas

[44]

APEX_04-22

LCQ Classic

None

Unknown

DBY8724

P Lu

University of Texas

[44]

APEX_04-23

LCQ Classic

None

Unknown

DBY8724

P Lu

University of Texas

[44]

APEX_04-24

LCQ Classic

None

Unknown

DBY8724

P Lu

University of Texas

[44]

APEX_04-28

LCQ Classic

None

Unknown

DBY8724

P Lu

University of Texas

[44]

YeastSCXReps

LCQ Classic

Iodacetimide

SCX

BY4741

Maynard et al.

NIH

[49]

FFE_nonICAT

LCQ Classic

Iodacetimide

FFE

BY2125?

Mingliang Ye

ISB


clICAT is acid cleavable ICAT D0227/D9236 and ICAT is the older ICAT reagent D0422/D8450. FFE, free flow electrophoresis; IEF, is isoelectric focusing; SCX, strong cation exchange; SDS-PAGE, sodium dodecyl (lauryl) sulfate-polyacrylamide gel electrophoresis.

King et al. Genome Biology 2006 7:R106   doi:10.1186/gb-2006-7-11-r106

Open Data