Table 2

The number of spectra acquired and peptides identified per experiment

Experiment

numSpec(P > 0.0)

numSpec(P > 0.9)

numDistinctPeptides(cumulative, P > 0.9)


gricat

24,833

2,585

734

cdc15_cdc23_newICAT

172,938

22,269

2,889

cdc15_cdc23_oldICAT

156,353

8,281

3,184

cdc15_cdc23_ICAT

21,392

3,337

3,293

cdc23_amf_newICAT

127,673

25,861

4,096

contFFE2Murea

105,686

5,473

4,430

FFEY1

64,880

2,966

5,994

FFEY1Scx

7,045

796

6,396

FFEY2

60,140

7,159

8,877

PeteryeastIcatstdFFE

136,563

4,680

9,375

TSAAT000c

217,919

43,628

11,423

TSAAT030c

249,774

42,519

12,042

TSAAT060c

214,851

28,089

12,424

TSAAT090c

198,057

31,428

13,247

TSAAT120c

179,408

26,182

13,588

TSAAxT000old

101,166

6,311

13,728

T00

94,208

9,206

13,840

T30

83,758

8,758

13,935

T50

106,572

4,606

14,026

opd00034_YEAST

24,049

4,554

14,557

opd00035_YEAST

23,715

3,931

14,862

peroximalPrep0702

24,209

3,197

15,236

Comp12vs12sizefrac

28,926

11,703

17,553

pxproteome

23,720

1,552

17,724

Comp12vs12standSCX

31,652

12,103

18,966

YeastICAT

55,922

6,760

19,577

PvM1

3,796

323

19,623

peroximal_clICAT

92,721

3,693

19,778

Ac30

255,937

37,873

20,025

yeast

140,567

29,411

24,548

gel_msms

343,654

43,022

32,450

mudpit

36,599

10,811

32,859

ipg_ief

136,209

27,792

33,383

rp_int_selected

53,358

14,669

33,684

rp_mass_selected

71,151

4,881

33,857

sdspage

92,802

19,208

34,734

YM_N14N15_DAYGly

38,951

1,658

34,806

YM_N14N15_DAYSer

39,315

1,862

34,843

YM_N14N15_SCYGly

37,124

1,364

34,861

YM_N14N15_SCYSer

37,658

2,238

34,902

APEX_04-22

38,334

1,732

34,926

APEX_04-23

38,175

1,775

34,949

APEX_04-24

36,407

1,359

34,963

APEX_04-28

40,612

2,248

34,995

YeastSCXReps

118,083

60,568

35,446

FFE_nonICAT

21,054

6,870

36,133


Column 1 is the experiment name, column 2 is the number of spectra associated with PeptideProphet probabilities >0, column 3 is the number of spectra associated with PeptideProphet probabilities >0.9, and column 4 is the cumulative number of distinct peptides with PeptideProphet probabilities >0.9.

King et al. Genome Biology 2006 7:R106   doi:10.1186/gb-2006-7-11-r106

Open Data