Table 2

The number of spectra acquired and peptides identified per experiment

Experiment
numSpec(P > 0.0)
numSpec(P > 0.9)
numDistinctPeptides(cumulative, P > 0.9)

gricat
24,833
2,585
734
cdc15_cdc23_newICAT
172,938
22,269
2,889
cdc15_cdc23_oldICAT
156,353
8,281
3,184
cdc15_cdc23_ICAT
21,392
3,337
3,293
cdc23_amf_newICAT
127,673
25,861
4,096
contFFE2Murea
105,686
5,473
4,430
FFEY1
64,880
2,966
5,994
FFEY1Scx
7,045
796
6,396
FFEY2
60,140
7,159
8,877
PeteryeastIcatstdFFE
136,563
4,680
9,375
TSAAT000c
217,919
43,628
11,423
TSAAT030c
249,774
42,519
12,042
TSAAT060c
214,851
28,089
12,424
TSAAT090c
198,057
31,428
13,247
TSAAT120c
179,408
26,182
13,588
TSAAxT000old
101,166
6,311
13,728
T00
94,208
9,206
13,840
T30
83,758
8,758
13,935
T50
106,572
4,606
14,026
opd00034_YEAST
24,049
4,554
14,557
opd00035_YEAST
23,715
3,931
14,862
peroximalPrep0702
24,209
3,197
15,236
Comp12vs12sizefrac
28,926
11,703
17,553
pxproteome
23,720
1,552
17,724
Comp12vs12standSCX
31,652
12,103
18,966
YeastICAT
55,922
6,760
19,577
PvM1
3,796
323
19,623
peroximal_clICAT
92,721
3,693
19,778
Ac30
255,937
37,873
20,025
yeast
140,567
29,411
24,548
gel_msms
343,654
43,022
32,450
mudpit
36,599
10,811
32,859
ipg_ief
136,209
27,792
33,383
rp_int_selected
53,358
14,669
33,684
rp_mass_selected
71,151
4,881
33,857
sdspage
92,802
19,208
34,734
YM_N14N15_DAYGly
38,951
1,658
34,806
YM_N14N15_DAYSer
39,315
1,862
34,843
YM_N14N15_SCYGly
37,124
1,364
34,861
YM_N14N15_SCYSer
37,658
2,238
34,902
APEX_04-22
38,334
1,732
34,926
APEX_04-23
38,175
1,775
34,949
APEX_04-24
36,407
1,359
34,963
APEX_04-28
40,612
2,248
34,995
YeastSCXReps
118,083
60,568
35,446
FFE_nonICAT
21,054
6,870
36,133

Column 1 is the experiment name, column 2 is the number of spectra associated with PeptideProphet probabilities >0, column 3 is the number of spectra associated with PeptideProphet probabilities >0.9, and column 4 is the cumulative number of distinct peptides with PeptideProphet probabilities >0.9.

King et al. Genome Biology 2006 7:R106   doi:10.1186/gb-2006-7-11-r106