Table 5 |
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|
Numbers of proteins matching SGD ORF annotation categories |
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| ORF annotation |
SGD |
PeptideAtlas P > 0.9, Nobs > 0 |
PeptideAtlas P > 0.9, Nobs > 1 |
|
|
|||
| Uncharacterized |
1,414 |
695 (49%) |
405 (29%) |
| Verified |
4,366 |
3,250 (74%) |
2,449 (56%) |
| Verified | silenced gene |
4 |
1 (25%) |
0 (0%) |
| Dubious |
820 |
95 (12%) |
13 (2%) |
| Pseudogene |
21 |
4 (19%) |
1 (5%) |
| Transposable element gene |
89 |
18 (20%) |
13 (15%) |
| Total |
6,714 |
4,063 (61%) |
2,881 (43%) |
|
|
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|
The percent of SGD ORFs seen in the PeptideAtlas are shown in columns 3 and 4. Column 3 uses all peptides with probabilities ≥ 0.9, while column 4 excludes peptides that have only been seen once in the S. cerevisiae PeptideAtlas. |
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|
King et al. Genome Biology 2006 7:R106 doi:10.1186/gb-2006-7-11-r106 |
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