Table 5

Numbers of proteins matching SGD ORF annotation categories

ORF annotation

SGD

PeptideAtlas P > 0.9, Nobs > 0

PeptideAtlas P > 0.9, Nobs > 1


Uncharacterized

1,414

695 (49%)

405 (29%)

Verified

4,366

3,250 (74%)

2,449 (56%)

Verified | silenced gene

4

1 (25%)

0 (0%)

Dubious

820

95 (12%)

13 (2%)

Pseudogene

21

4 (19%)

1 (5%)

Transposable element gene

89

18 (20%)

13 (15%)

Total

6,714

4,063 (61%)

2,881 (43%)


The percent of SGD ORFs seen in the PeptideAtlas are shown in columns 3 and 4. Column 3 uses all peptides with probabilities ≥ 0.9, while column 4 excludes peptides that have only been seen once in the S. cerevisiae PeptideAtlas.

King et al. Genome Biology 2006 7:R106   doi:10.1186/gb-2006-7-11-r106

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